BAC Information

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BAC

Clone NameMSMg01-155M23
Chromosome8 (Build37)
Map Location 31,442,306 - 31,442,914
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155M23.T7 (MSMg01no155_m23.b1)MSMg01-155M23.TJ (MSMg01no155_m23.g1)
ACCAG356720AG356721
length735736
length of high quality
(start - end)
569 (43 - 611)609 (75 - 683)
definitionCHROMAT_FILE: MSMg01no155_m23.b1 PHD_FILE: MSMg01no155_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:47 2005CHROMAT_FILE: MSMg01no155_m23.g1 PHD_FILE: MSMg01no155_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCTTTGTTCAGCTCCGAGCCCCATTTTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCTGAGTTCTTTATATATATTGGATATTAGTCCCC
TGTCTGATTTGGGATAGGTAAAGATCCTTTCCCAATCCGTTGGTGGCCTT
TTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTGTAT
GAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCCCCTGTACCCATGTCTTCGAGGCTTTTCCCTACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGCGTTCCTTAAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGCA
TTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATG
CTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGC
CCACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCCCCCTTGCT
CTGCACCACCGTTTTTAGTCTGGCATGGGGATTTCTCCAGAGGCCCTTTT
ATCCTTGACATGAGTCTTTGCCATTCCCGGCTATT
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACACTAGAAATACACCATGAGTA
AGAAGCCTCTAAGAAGAAATAGAACATATGTGATATGAAAGTAGAGGAGC
GAGGGACTGAACCCCAAAGTGCCTGAGCAGAAGCACCTGCTAGAAAAGAA
CCACTAGTAATACACAAGCTAGCATTCAGGATACATTAAAACACTTCTGT
TTAGCTCTGCTCGCCAGTAAGTAGATAACTAATGATCTCCTTAGCTGGAA
GACAAAAAGCCATTTTTTATTGTTGTGATAGCCAAAAGTCAAGGTCAAAA
CCCACCAAATCAGATATGCATTGTAGCCATAACCTGGACATCTGATGATC
CTTTCAGGATAGTAGTTCTTTACATTCAAGGGTAGAAAAACACAAGATCA
CTACAAACATACACATTCCTGTGAATTGGTATTATAAGAATTTGCTGAGG
CAAGACTTAGTAATAATGCATTCTGTATTCCACTATCTCCTTTACTATTG
GAGCCTGATACATCAAGTCTCACATCAAAGGCATAGCTTATAATATACCC
TACATAAATACTATCCACTGACTAGGATGTTTACATAGCATTAAATTACA
TAAATTTTTAAAACTACTTTAAGGATTTTAAATGCAGATGGCAATAGATC
CAATTGCATACTAGGGACTGTTTATTTGCTTTGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_m23.g1 MSMg01no155_m23.g1 CHROMAT_FILE:
MSMg01no155_m23.g1 PHD_FILE: MSMg01no155_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:47 2005
         (609 letters)



>mm_chr8_31442106_31443114
          Length = 1009

 Score = 1162 bits (601), Expect = 0.0
 Identities = 607/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacactagaaatacaccatgagtaagaagcctctaagaagaaatagaacatatgtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaacactagaaatacaccatgagtaagaagcctctaagaagaaatagaacatatgtgat 260

                                                                       
Query: 61  atgaaagtagaggagcgagggactgaaccccaaagtgcctgagcagaagcacctgctaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaaagtagaggagcgagggactgaaccccaaagtgcctgagcagaagcacctgctaga 320

                                                                       
Query: 121 aaagaaccactagtaatacacaagctagcattcaggatacattaaaacacttctgtttag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 aaagaaccactagtaatacacaagctagcattcaggatacattaaaacacgtctgtttag 380

                                                                       
Query: 181 ctctgctcgccagtaagtagataactaatgatctccttagctggaagacaaaaagccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgctcgccagtaagtagataactaatgatctccttagctggaagacaaaaagccatt 440

                                                                       
Query: 241 ttttattgttgtgatagccaaaagtcaaggtcaaaacccaccaaatcagatatgcattgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttattgttgtgatagccaaaagtcaaggtcaaaacccaccaaatcagatatgcattgt 500

                                                                       
Query: 301 agccataacctggacatctgatgatcctttcaggatagtagttctttacattcaagggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccataacctggacatctgatgatcctttcaggatagtagttctttacattcaagggta 560

                                                                       
Query: 361 gaaaaacacaagatcactacaaacatacacattcctgtgaattggtattataagaatttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaaacacaagatcactacaaacatacacattcctgtgaattggtattataagaatttg 620

                                                                       
Query: 421 ctgaggcaagacttagtaataatgcattctgtattccactatctcctttactattggagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaggcaagacttagtaataatgcattctgtattccactatctcctttactattggagc 680

                                                                       
Query: 481 ctgatacatcaagtctcacatcaaaggcatagcttataatataccctacataaatactat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgatacatcaagtctcacatcaaaggcatagcttataatataccctacataaatactat 740

                                                                       
Query: 541 ccactgactaggatgtttacatagcattaaattacataaatttttaaaactactttaagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 ccactgactaggatgtttacatagcattaaattacataaatttttaaaattactttaagg 800

                    
Query: 601 attttaaat 609
           |||||||||
Sbjct: 801 attttaaat 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)