BAC Information

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BAC

Clone NameMSMg01-156A20
Chromosome8 (Build37)
Map Location 17,862,343 - 17,862,647
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1, Angpt2, Agpat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156A20.T7 (MSMg01no156_a20.b1)MSMg01-156A20.TJ (MSMg01no156_a20.g1)
ACCAG356891AG356892
length728723
length of high quality
(start - end)
309 (45 - 353)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no156_a20.b1 PHD_FILE: MSMg01no156_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:05 2005CHROMAT_FILE: MSMg01no156_a20.g1 PHD_FILE: MSMg01no156_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAGAAATAAATTGAAAGCTATCCCAGGATTCCACCGCTTCCGCTT
TCATTTTGCATTTTCATCCGCAAGGACATTCCGTGCTTCTCCCTGTAGTT
GTCTGGCCACATTGTTCTGCAGAGTATTCGACAGAAATATGAAAGAACCT
TGAGATCCTGACCCAGCAAAGTGTGATAACTTTGGGAGACCATGGGTGGG
GTATACTTGTATGTAGATCAAAAACAGGACAAATAACCTCTCCAGATTCC
AAGATACTTTATTTTTGCTGCTTGAGGCTGAAATTAAATATCCCCTTGGT
TTATGGGCTGATTATTTTCTTCGCAAAACCTCTATGTTGCTCAGTGTTTA
TGTGTGGTTTTGAGCAATGCAGGCAAGAAAGGGACACTAATTCAGACAGA
CACATGGAAGAGGTACTACTGGACCAATAGGATCAGTTGAGAGTGTCTTC
CAGTTTGAAAATCCAAACCTCCTTGGCTGTAGCATCGTGTGTGTGTGTGT
GTGTGTGTGTGCTGAAAGCGCGCTCTCTTTAATATATAACTGTCTTTCTT
TACTATTCTTTTATCTCCTTATCTCTTTTATCTTTATCCGTATCTTCCTC
TATAAATTTAATTTTTATACTATAATTTATATATATATATAATTCTAATA
TCTTCATCTTATCTTTCATATTATTATC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATGAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TGAAAAATTCAGGTAACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
CTCAGTCTGGCGGTTCCTCAGAAAATTGGACATGGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCCTATACCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCACAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACTTGGAGGCCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGTCCAAAACCTAGGATAACCAAGATATATGATACAATTTC
CTTAACACATGAAACTAAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_a20.b1 MSMg01no156_a20.b1 CHROMAT_FILE:
MSMg01no156_a20.b1 PHD_FILE: MSMg01no156_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:05 2005
         (309 letters)



>mm_chr8_17862139_17862847
          Length = 709

 Score =  590 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagaaataaattgaaagctatcccaggattccaccgcttccgctttcattttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagaaataaattgaaagctatcccaggattccaccgcttccgctttcattttg 264

                                                                       
Query: 65  cattttcatccgcaaggacattccgtgcttctccctgtagttgtctggccacattgttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattttcatccgcaaggacattccgtgcttctccctgtagttgtctggccacattgttct 324

                                                                       
Query: 125 gcagagtattcgacagaaatatgaaagaaccttgagatcctgacccagcaaagtgtgata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagagtattcgacagaaatatgaaagaaccttgagatcctgacccagcaaagtgtgata 384

                                                                       
Query: 185 actttgggagaccatgggtggggtatacttgtatgtagatcaaaaacaggacaaataacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actttgggagaccatgggtggggtatacttgtatgtagatcaaaaacaggacaaataacc 444

                                                                       
Query: 245 tctccagattccaagatactttatttttgctgcttgaggctgaaattaaatatccccttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctccagattccaagatactttatttttgctgcttgaggctgaaattaaatatccccttg 504

                
Query: 305 gttta 309
           |||||
Sbjct: 505 gttta 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)