Query= MSMg01no156_l09.b1 MSMg01no156_l09.b1 CHROMAT_FILE:
MSMg01no156_l09.b1 PHD_FILE: MSMg01no156_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:54 2005
(670 letters)
>mm_chr8_8187657_8188727
Length = 1071
Score = 1228 bits (635), Expect = 0.0
Identities = 659/667 (98%), Gaps = 1/667 (0%)
Strand = Plus / Plus
Query: 5 gaattcacaggccacaacaaccattaagcaatgctcttcaaatctctgcagtaaaatgtt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaggccacaaaaaccattaagcaatgctcttcaaatctctgcagtaaaatgtt 264
Query: 65 ggttaaaagctttgacacttcacagtctggtgcagtgtccaacccatttataagtgattc 124
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggataaaagctttgaaacttcacagtctggtgcagtgtccaacccatttataagtgattc 324
Query: 125 aacgcacacttctgagaatccagggtcaaacgtgtaattcgtatgaagtagctcccacta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacgcacacttctgagaatccagggtcaaacgtgtaattcgtatgaagtagctcccacta 384
Query: 185 gaaatgaatggatgaactcaagaaactcaattcttgggcttcatacaaatttgagtttta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaatgaatggatgaactcaagaaactcaattcttgggcttcatacaaatttgagtttta 444
Query: 245 tcaaacttatttcatattcccttccatttaatcaatactcatttggaagtagtctggtag 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaacttatttcatattcccttacatttaatcaatactcatttggaagtagtctggtag 504
Query: 305 ttattacaagacacactcatgtgacaagacatgatatctgacctcaaagtaccatgtcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttattacaagacacactcatgtgacaagacatgatatctgacctcaaagtaccatgtcat 564
Query: 365 atcctattacccaaatcaaggatgcacagtaaagagtcaagcaggtggcattaaattgct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcctattacccaaatcaaggatgcacagtaaagagtcaagcaggtggcattaaattgct 624
Query: 425 agcaataaatgtttgcacagcatgaaatatagatgataactattgaagaaaggctgaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcaataaatgtttgcacagcatgaaatatagatgataactattgaagaaaggctgaaaa 684
Query: 485 aatatgttgatctaatgcctacagcacaaagaagactcttctgattctgacatgaggaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatatgttgatctaatgcctacagcacaaagaagactcttctgattctgacatgaggaaa 744
Query: 545 atttgacgtcaagtttaaacttaagagaat-agaggtgtaacctaggaacagggtaggtg 603
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 745 atttgacgtcaagtttaaacttaagagaatgagaggtgtaacctaggaacagggtaggtg 804
Query: 604 agcacatcgaagaagtacgaatgttggacctctgggagagaagaggtgagtatctgggac 663
||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 805 agcacatcgaagaagtaagaatgttggacctctgggagagaagaggtgagcatccgggac 864
Query: 664 tgcatga 670
|||||||
Sbjct: 865 tgcatga 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space: 700260
Effective search space used: 700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_l09.g1 MSMg01no156_l09.g1 CHROMAT_FILE:
MSMg01no156_l09.g1 PHD_FILE: MSMg01no156_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:54 2005
(309 letters)
>mm_chr8_8253669_8254377
Length = 709
Score = 557 bits (288), Expect = e-163
Identities = 294/296 (99%)
Strand = Plus / Minus
Query: 1 gttcacgtgtgtcaaagtatatgaaggaatgaacagaaatgagaggttagagcattagcg 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 487 gttcacgtgtgtcaaagtatatgaaggaatgaacagaaatgagagggtagagaattagcg 428
Query: 61 ggattagctgtggacctggcattgcaaagcacccaccccctttgctatgtattttgctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggattagctgtggacctggcattgcaaagcacccaccccctttgctatgtattttgctac 368
Query: 121 tctcccctccctgacccctattcgtgagctagacttttgttagcttgggtttaggagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tctcccctccctgacccctattcgtgagctagacttttgttagcttgggtttaggagaga 308
Query: 181 ctctgagtagatgagctggaccctgactccttgaaaaattttgccttcttcttgtcacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctctgagtagatgagctggaccctgactccttgaaaaattttgccttcttcttgtcacca 248
Query: 241 gaaaggtatccatattgaagtttttgcttgcttggttttttttttttggggggggg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaaaggtatccatattgaagtttttgcttgcttggttttttttttttggggggggg 192
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
