BAC Information

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BAC

Clone NameMSMg01-156O01
Chromosome8 (Build37)
Map Location 84,054,994 - 84,055,306
singlet/doubletsinglet
Overlap genenone
Upstream geneFrem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneInpp4b, LOC671182, Il15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156O01.T7 (MSMg01no156_o01.b1)MSMg01-156O01.TJ (MSMg01no156_o01.g1)
ACCAG357505AG357506
length783797
length of high quality
(start - end)
317 (45 - 361)228 (74 - 301)
definitionCHROMAT_FILE: MSMg01no156_o01.b1 PHD_FILE: MSMg01no156_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:07 2005CHROMAT_FILE: MSMg01no156_o01.g1 PHD_FILE: MSMg01no156_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:07 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCGGTAATGGTTGGCCCAACGAAACCCACAAGGCCTTCTGATGGAA
TGCTAATCGTAGAATAGTGAGACCGGAGAAGCCAACTGAATCAGATTTTT
ATCCTTGCAATATACTTGCTTCCTGTCAATCAATAAAAACTATTTCATTT
TGATAGACTAGATATTTAATTCTTAGTACTGGGTGATGTCCAAAATAATG
AGAAATACTTGTGCTCTTCTAGTGAGGAGCATTATCAATAGATTCAGTCT
GAGCAGTCAGCCTGACTTCTCCATTTTACAACTGACTCTGTGTGAGCTTG
GGAGAAAAATTTTTTTTCTTGCCCTCCCCCCCTTATTTTCAAATTTGATA
TGTTTCATTCAATGTCCCCGAGGCTTGAACTAGACATCAAAAACTCTGAT
TCTAAACGAGATTGGTGTTATAAATGCCATGCCTATCTCCAAAAAAATAC
AGAGACTCCATTTTTAAAACATCTGAAACTGAATTAAGATATCGTAAGGG
CCCAAAAAGGGAATATATATATATATATGTCATAATTTCCTAAAAGGAAA
ATTAATTTGAATCTGGCAGTTCTGTACTGGGAATTGGAAAGCAATTTTGG
GGGGCAATAAGTTCTTTTATTTTTTGAATTTTAAATATACTGGCTCTGGA
AGTTTAGATATAAGCCCTTGAATAACATTTTTTCAAAGAAAAAAAATCCT
TAATTCCAACTCTATCCCCCTATGGCAACTTTC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTCAGAAATTCTTTTTTTTAGATCTGTACCCCATT
TTTAAATAGGGTTATTTGGTTCTCCCCAGTCTAACCTCTTGGGTTCTTTG
TATATGTTGCATATTAGCTCTCTAGGGGATGTAAGATTGGTAAAGATCTT
TTCTCAATCTGTTGGTTGCTGTTTTGTCTCATTGATGGTGTTCTTTGGCT
TACTGAATCTTTGCAATTTTTTGAGGTCCCATTCGTCGATTCTTGAACTT
ACAGCAAAAGACATTGGGGTTCTGTTCAGAAAAATTTCCCCTATGACCAT
ATGTTAAAGGTTCTTTCTCACTTTCTCCTCTATAAGTTTCAGTGCCTCTG
GTTTTATGTGGAGGTCTTGGATGTTGAACATTAGATGTATCAACTTGGAC
TTGAGCTTTGCATATGGAGATAAGGACGGATCATTTCATATCCTTCTACA
TGCTTACTGCTAGTTGAGCCCCGACCATTTGCTGAACATGCTTGTCTTTT
TTTTCTATGGATGATTTTTAGTTCCTTTGCCCAACGATCATGAGCACCTT
AGTTGGGTTGAATTTCATTTCCGGGCTCTTTCAACTTTAATTCCCTTTGT
TCTACTTTGGGCTGACCCTTGTCTCTATTTCTTTTGAAATTTTTTTTTTA
TTTATTGGTTGGAAGTTTCTTGGGAATGTATGATTTCACATCAATAAATT
TACTTTTTAATTTGTTAGTGTAAAATTTTTTCCTTTTAACACTTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_o01.b1 MSMg01no156_o01.b1 CHROMAT_FILE:
MSMg01no156_o01.b1 PHD_FILE: MSMg01no156_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:07 2005
         (317 letters)



>mm_chr8_84054791_84055507
          Length = 717

 Score =  605 bits (313), Expect = e-178
 Identities = 313/313 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcggtaatggttggcccaacgaaacccacaaggccttctgatggaatgctaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattctcggtaatggttggcccaacgaaacccacaaggccttctgatggaatgctaat 457

                                                                       
Query: 64  cgtagaatagtgagaccggagaagccaactgaatcagatttttatccttgcaatatactt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cgtagaatagtgagaccggagaagccaactgaatcagatttttatccttgcaatatactt 397

                                                                       
Query: 124 gcttcctgtcaatcaataaaaactatttcattttgatagactagatatttaattcttagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcttcctgtcaatcaataaaaactatttcattttgatagactagatatttaattcttagt 337

                                                                       
Query: 184 actgggtgatgtccaaaataatgagaaatacttgtgctcttctagtgaggagcattatca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 actgggtgatgtccaaaataatgagaaatacttgtgctcttctagtgaggagcattatca 277

                                                                       
Query: 244 atagattcagtctgagcagtcagcctgacttctccattttacaactgactctgtgtgagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atagattcagtctgagcagtcagcctgacttctccattttacaactgactctgtgtgagc 217

                        
Query: 304 ttgggagaaaaat 316
           |||||||||||||
Sbjct: 216 ttgggagaaaaat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)