BAC Information

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BAC

Clone NameMSMg01-157B18
Chromosome8 (Build37)
Map Location 37,678,164 - 37,826,179
singlet/doubletdoublet
Overlap genenone
Upstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
Downstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149, Sgcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157B18.T7 (MSMg01no157_b18.b1)MSMg01-157B18.TJ (MSMg01no157_b18.g1)
ACCAG357676AG357677
length722721
length of high quality
(start - end)		315 (40 - 354)287 (70 - 356)
definitionCHROMAT_FILE: MSMg01no157_b18.b1 PHD_FILE: MSMg01no157_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:24 2005CHROMAT_FILE: MSMg01no157_b18.g1 PHD_FILE: MSMg01no157_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,825,868 - 37,826,179)(37,678,164 - 37,678,450)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TAGAATTGTGTGCTTTAAAATCTTTTGGTCTTTCTCAAGATCATCTTCTG
TGTTCAACCTAAAGAAAATAAAGATAAAACGAAAAGCAAATCCAGTTAGA
ATGTGCACCATTGACGTAAAGCATCTCGTTTCGTTGCCGGACATGTGACG
TCATCTAGTTCATAGGCATGTGATGTTTAAGAGCAAGAGAGTGGAGGCAA
GTTGCGTCAAACCAAAAGAAAGTATGACTCAAGTCCCTTAGTGAGTTTGG
GGCTTGTGAATTTTTATTTACTCATTTTGACTTATGTATTTGTTTGAGGG
AAGGTATTGTATATACCCCGCCCCCGCCTACGGGAGTCAGAGGATCATTT
ATGGGAGTAGGTCTTCTCTTTCAACTATATGGGTTCTGGAATATAACTTG
TATCGTAAGTTTTGGGGTGAGAACCATCTTGCCATCTTCTTCATGTATGA
ATAGGTGATGCTCATCTTTTCTTACCAGGATCCTGTTTTGTAGCCAGGAA
GTTTTCATTCAAAGATCTTAGCTCTTTAACACTGCGGGCTGAACTTCCCT
ATCATGTTTAGTTATTGGTGTCTGACTTCTTCACTCTAATAATACCGAGA
GCCCCTTAGAATAGGANAAGATGATTAACATGGATTCAATTTTCTATGAA
TCGTGATGAAAAGGCGTTTGTA

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTAGTTTGGAGGGTACATTCAGCCTCATTG
AGGCAGATCGGTGTTGCCAGGGTATTTACCTGCAGGCAAATGCTGGAGAC
CCAAAGGCAGTGCAGGGTGCATGTGGCCCCTGCCTGCCAGGAGACTACAG
ACTGGGAAGCAAGGGGGTGAATGGAAATGAGGGACTGTTGAGGGCCCAGG
AAGTGAAGACCTTGATAGCCCAAGAAGATGAAGTTGCCGCCTGAAGTGTG
GATGCTGGAGGAACTGTGGACTCATCCACAATTAGCATCCCCACCTGGTA
CTCACATCTCTGAATCCCCCACCCCCTCATTCTAAGTCGCATATAATTTG
CATATAGCTTATGCACACTCTCCCAGATACTTTTTAAATAATTATTATCG
TATTGATAACTCTTAGAGTATGAAATACATTGTAAGCACTATGTAGATTT
GTCTATGTTCAGTATAGACACATTTATTTTTCCTCCTAATACTTTCTCTT
TGCATGATTAGGCATAGAATTTAGGATAGAGCTAGTCATATGCCCTTCCA
CTGAGCTACACCCCTATCCCCAGCACCTACTTTCAATTTAAAAATTATTA
TTATTACTATTACTACTGCTGCTATTATTGTTATTGTTGTTGTTGTGTGT
GATGTGCATACAGACACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_b18.b1 MSMg01no157_b18.b1 CHROMAT_FILE:
MSMg01no157_b18.b1 PHD_FILE: MSMg01no157_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:24 2005
         (315 letters)



>mm_chr8_37825665_37826379
          Length = 715

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatagaattgtgtgctttaaaatcttttggtctttctcaagatcatcttctgtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattcatagaattgtgtgctttaaaatcttttggtctttctcaagatcatcttctgtg 456

                                                                       
Query: 64  ttcaacctaaagaaaataaagataaaacgaaaagcaaatccagttagaatgtgcaccatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttcaacctaaagaaaataaagataaaacgaaaagcaaatccagttagaatgtgcaccatt 396

                                                                       
Query: 124 gacgtaaagcatctcgtttcgttgccggacatgtgacgtcatctagttcataggcatgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gacgtaaagcatctcgtttcgttgccggacatgtgacgtcatctagttcataggcatgtg 336

                                                                       
Query: 184 atgtttaagagcaagagagtggaggcaagttgcgtcaaaccaaaagaaagtatgactcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atgtttaagagcaagagagtggaggcaagttgcgtcaaaccaaaagaaagtatgactcaa 276

                                                                       
Query: 244 gtcccttagtgagtttggggcttgtgaatttttatttactcattttgacttatgtatttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gtcccttagtgagtttggggcttgtgaatttttatttactcattttgacttatgtatttg 216

                       
Query: 304 tttgagggaagg 315
           ||||||||||||
Sbjct: 215 tttgagggaagg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no157_b18.g1 MSMg01no157_b18.g1 CHROMAT_FILE:
MSMg01no157_b18.g1 PHD_FILE: MSMg01no157_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:24 2005
         (287 letters)



>mm_chr8_37677964_37678650
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagtttggagggtacattcagcctcattgaggcagatcggtgttgccagggtatttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagtttggagggtacattcagcctcattgaggcagatcggtgttgccagggtatttac 260

                                                                       
Query: 61  ctgcaggcaaatgctggagacccaaaggcagtgcagggtgcatgtggcccctgcctgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcaggcaaatgctggagacccaaaggcagtgcagggtgcatgtggcccctgcctgcca 320

                                                                       
Query: 121 ggagactacagactgggaagcaagggggtgaatggaaatgagggactgttgagggcccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagactacagactgggaagcaagggggtgaatggaaatgagggactgttgagggcccag 380

                                                                       
Query: 181 gaagtgaagaccttgatagcccaagaagatgaagttgccgcctgaagtgtggatgctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagtgaagaccttgatagcccaagaagatgaagttgccgcctgaagtgtggatgctgga 440

                                                          
Query: 241 ggaactgtggactcatccacaattagcatccccacctggtactcaca 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaactgtggactcatccacaattagcatccccacctggtactcaca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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