BAC Information

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BAC

Clone NameMSMg01-157C18
Chromosome8 (Build37)
Map Location 67,480,787 - 67,481,073
singlet/doubletsinglet
Overlap gene3110005G23Rik
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647
Downstream geneTrim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157C18.T7 (MSMg01no157_c18.b1)MSMg01-157C18.TJ (MSMg01no157_c18.g1)
ACCAG357724AG357725
length749750
length of high quality
(start - end)
318 (31 - 348)291 (61 - 351)
definitionCHROMAT_FILE: MSMg01no157_c18.b1 PHD_FILE: MSMg01no157_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:28 2005CHROMAT_FILE: MSMg01no157_c18.g1 PHD_FILE: MSMg01no157_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTGGGG
AATACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATC
ATCAGGGAAATGCAAATCAAACAACCCTGATATTCCACCTCACACAAGTC
AGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATG
TGGAGAAAGAGGAATACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTAC
AACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTA
CTTCTGGAGGATCCCGCACTACCTCTACTGGGCATATATCCAGAAGATGN
TTCNACCCCTAACAAGGCCACATGCTCCACTATGTTCATAGCAGCCTTAT
TTATAATAGCCAGAAACAGAAAAGAACCCAGATGTCCCTCAACAGAGGAA
TGGATATAGAAAATGTGGTACATTTACACAATGGAGTACTTACTCAGCTA
TTGAAAACAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAG
GGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCATATGATAC
GTACTCACTGGTAAGTGAATATTAGCCCAGAAACTTAGAATACCCAAGAT
ATAAGATACAATTTGCAAACCACATGAAACTCAAGAAGAGCGAAGACCAA
AGTGTGGACACTTTGCCCCCTTCTTAGAATTGGGAACAAAACACCCATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAGGCTTGCTGGTCCACGAAGACTGCCTCCAAAGGTAGAA
GGAGAGAAAACACTCTGCATATGTTGTCTGGCATCCACATTCCTGCTGTA
GAAAAGTGCACACTCACAAGCACAATAAATACATAAATAAAGCCAGGCAA
GGTGGCACAAGCCTTTAATTCCAACACCTGGAGGGCAGAGGCAGGCAGTC
TCTGTGAGTTCAAGGCCAGCCTGAGCTACAAATCAAGTTTAGGCCAATTA
AGCTTTACAGTGAGACCCTGTCTCAAAAAAACAAAAAAAATAAAACATTT
AAATCCATCCCNATTCCTGTCCTGTCAGTAACTAGAGGCAGAGGCAGGAA
GATCAAAAGTTAAAAAAAAATAGAGTCACATAGTAGTAAGACCTTAGCCT
TTTGCCAAATTCATGCAGAGATTAGCATATATACAGATCCATATTAATTT
TAATTAATTAATGTCATCATTTAGCACTCTTCTTACTTTTCTAAGCTCCT
CATTCATCACACTCCACTAGAAGGTGCACTGTGTTCCACAAGGCTGGCAC
CAGAGGACTAGTGTGCCTGGAGAGTACATTTCTAGCATGCCCTGGGTCTT
GCTGACTTGTCTGCATGCAGCATTTGAGAGCCGCTGCCCTGAAGCTCACC
CCTTTTCTGTGTTATAGGCCCCTGTCCATCAGTAGAGACTAGCTATGGGC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_c18.g1 MSMg01no157_c18.g1 CHROMAT_FILE:
MSMg01no157_c18.g1 PHD_FILE: MSMg01no157_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:28 2005
         (291 letters)



>mm_chr8_67480587_67481277
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcttgctggtccacgaagactgcctccaaaggtagaaggagagaaaacactctgcat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 caggcttgctggtccacgaagactgcctccaaaggtagaaggagagaatatactctgcat 260

                                                                       
Query: 61  atgttgtctggcatccacattcctgctgtagaaaagtgcacactcacaagcacaataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttgtctggcatccacattcctgctgtagaaaagtgcacactcacaagcacaataaat 320

                                                                       
Query: 121 acataaataaagccaggcaaggtggcacaagcctttaattccaacacctggagggcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataaataaagccaggcaaggtggcacaagcctttaattccaacacctggagggcagag 380

                                                                       
Query: 181 gcaggcagtctctgtgagttcaaggccagcctgagctacaaatcaagtttaggccaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggcagtctctgtgagttcaaggccagcctgagctacaaatcaagtttaggccaatta 440

                                                          
Query: 241 agctttacagtgagaccctgtctcaaaaaaacaaaaaaaataaaaca 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctttacagtgagaccctgtctcaaaaaaacaaaaaaaataaaaca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)