BAC Information

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BAC

Clone NameMSMg01-157N20
Chromosome8 (Build37)
Map Location 75,913,677 - 75,913,986
singlet/doubletsinglet
Overlap genenone
Upstream geneEps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large, LOC100039001
Downstream geneLOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157N20.T7 (MSMg01no157_n20.b1)MSMg01-157N20.TJ (MSMg01no157_n20.g1)
ACCAG358231AG358232
length772739
length of high quality
(start - end)
319 (37 - 355)293 (67 - 359)
definitionCHROMAT_FILE: MSMg01no157_n20.b1 PHD_FILE: MSMg01no157_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:17 2005CHROMAT_FILE: MSMg01no157_n20.g1 PHD_FILE: MSMg01no157_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTT
ACTTGTTAATTTGGATTTATCTTTAGATTCTATTTTCATGTCACACCAGG
GAGGTTGTCTTTCTTTGTATGGATAGAAATGGCATGCCTCTTTAATGAAT
GTATATGTACTACATGTATATGAGGGATACCCTCCAAATAAAAACCTAAC
AGATTAGAAAATGAGTTTTAAACCCTAAAACAAGGTCATGAACAGGAATC
AGTTCCAGGATCCCTGATCTAAGCCACTAGATACACAATGGAGGCTGAGC
TATTTGCCCAGAAAAAAAAATCTTCTACCCTAGCCTTTGAATTGGCAAGA
ATTTAATAAATACACCTACTAGCCCCATCAAATTATCATTGTGTGTGTGT
GTGCGCCCCCCCCCCAAAAAAAAAAAAAAAATTTTTGGGGTGGTGGGGTG
TTTTTTTTTTTTATTTTTTTTTCTTCCCCCTTTCCTCCTTACACTATTTC
CTCTTTCCTCTATCTACTTTCCCTCCTTATTTTCTTTTTTATTCTTCTCT
CTCTCCCCCAAACTTTACCACTCTTTCCCTTTCCTTTTTCCATTCACATC
ACACACCCCTTTTCATCTAATTCTTCTCCCATTATCCCCTTTTTTTTCCA
ATATTCTTCACCCACTCCATTACCCCTTTTATTTTTAAAAATATTCCCAC
CCCTCTTATTTTTACCTTCTTCATTCCTTCATTTTTATAACCCTCCTTCT
ATTTATAAGATTTTATTTATTC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGTTCATATATCCACAACATGCCCCAACTGGTAAGAAGGACACAT
GCTCCACTACCCCCCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAA
AGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACA
TCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATT
AGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACA
TGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_n20.b1 MSMg01no157_n20.b1 CHROMAT_FILE:
MSMg01no157_n20.b1 PHD_FILE: MSMg01no157_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:17 2005
         (319 letters)



>mm_chr8_75913473_75914190
          Length = 718

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttacttgttaatttggatttatctttagattctattttcatgtcacaccagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcttttacttgttaatttggatttatctttagattctattttcatgtcacaccagg 455

                                                                       
Query: 65  gaggttgtctttctttgtatggatagaaatggcatgcctctttaatgaatgtatatgtac 124
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 454 gaggttgtctttctttgtatgggtaggaatggcatgcctctttaatgaatgtatatgtac 395

                                                                       
Query: 125 tacatgtatatgagggataccctccaaataaaaacctaacagattagaaaatgagtttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tacatgtatatgagggataccctccaaataaaaacctaacagattagaaaatgagtttta 335

                                                                       
Query: 185 aaccctaaaacaaggtcatgaacaggaatcagttccaggatccctgatctaagccactag 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 334 aaccctaaaacaaggtcatgaacaggaatcagttccaggatcactgatctaagccactag 275

                                                                       
Query: 245 atacacaatggaggctgagctatttgcccagaaaaaaaaatcttctaccctagcctttga 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 274 atacacaatggaggctgagctatttgcccag-aaaaaaaatcttctaccctagcctttga 216

                      
Query: 305 attggcaagaa 315
           |||||||||||
Sbjct: 215 attggcaagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)