BAC Information

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BAC

Clone NameMSMg01-157O14
Chromosome8 (Build37)
Map Location 19,732,749 - 19,733,086
singlet/doubletsinglet
Overlap gene4930467E23Rik
Upstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730
Downstream geneLOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157O14.T7 (MSMg01no157_o14.b1)MSMg01-157O14.TJ (MSMg01no157_o14.g1)
ACCAG358265AG358266
length748747
length of high quality
(start - end)
324 (31 - 354)338 (371 - 708)
definitionCHROMAT_FILE: MSMg01no157_o14.b1 PHD_FILE: MSMg01no157_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:21 2005CHROMAT_FILE: MSMg01no157_o14.g1 PHD_FILE: MSMg01no157_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGCTCATA
CCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAG
TAAATGGTGAGAAGGTAGAAGCAATCCCACTAAAATCAGGGACTAGACAA
GGCTGCCCACTTTCTCCCCATCTATTCAATATAATACTTGAAGTCCTAGC
CAGAGCAATTGGACAACAAAAGGAGATCAAGGTGATACAAATTGGAAAGG
AAGAAGTCAAAATATCACTATTTGCAGATGATATGATAATATATATAAGT
GAGCCTAAGAACTCCACCAGGGAACTTCTAAACCTGATAAACAGCTTTAG
TCTTGTAGCTGCACCCCCCACTTAACTCAAACAAATCAGTGGCCTTTCTC
TACAGAAAGGATAAACAGGCTGAGAAAGAAATCAGGGAAACAACACCTTT
CACAATAGTCACAAATAATATAAAATACCTTGGTGTGATTCTAACTAAGG
AAGTGAAAGAGTTAGAAAGGGCAATTTGCAAATTCATCTGGAATAAAAAC
CTAGGATAGCAAAAACTCTTCTCAATGATAAAAGAAGATCTGGTGGCATC
ACCATGCCTGACCTAAAGCTGTACTACAGAGCAATTGTGATAAAAACTGC
ATGGTAGGCCTTTTCTGTCTGGACTGGAGGCAGGAGGCTGTGAGTGGCAG
GTGTGCTCTGATCTGTTGGAGCTAACTACTGCCNAGCAGGCTGCCGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXATGCTGAGATGAACTTACTGGGAACTTTTCTATGATGCTT
TGTACTTTGACCAAGGTAGTGAGAGAACACCTGCCTTATGTGGACACAGC
CATGCACATTATCCCTAGCACAGTAAATGAACATTTGAGTAGTTATAAAT
AAATAAGGCAATTCCAGTTATTTTCTTACATCAGAAGAAAATTTGCTTCA
TAGTATGTGGTGCTTAAAGGAGATGGGGCTCTTATTTAGCATTTGGGAAT
GTCCCTAAATGTCCTTTCCATTTGCAGGACTTCGCTGCATTATGCATGTG
CCCTCAACCATCCACACGCGGTGACACTATTATTAGAAAATAATTCCAGC
ATTAACATCCGGGATGATGAAGGCTGCACACCCTTGATTAAGGTAGCTAT
TGGCCATCTGTTTTGACATGAAATGGATAGAGGTTGTCCTTGTTTGGTTT
CTCTTGCTGTGATAAAACACTGACCAAAAACAACTCAGGAAAGGAAGTGG
TTATTTGGCTTACATTTACACATCACAGATCATTCTCAAGGGGAACCAGG
GCAGGAGCTCAAATCAGGAACTGGAGGGAAGAACTGAACTGGAGTTCACA
GGAGAATGCAGCTTTTCCATGGCTTCTACCAAGCCTTGCTCAGGTGTTTA
CTTTTTGTTGTTGCTGCTGTTTTTGCTTTTTAACAAAATTGAGGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_o14.g1 MSMg01no157_o14.g1 CHROMAT_FILE:
MSMg01no157_o14.g1 PHD_FILE: MSMg01no157_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:21 2005
         (338 letters)



>mm_chr8_19732549_19733286
          Length = 738

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgacactattattagaaaataattccagcattaacatccgggatgatgaaggctgcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgacactattattagaaaataattccagcattaacatccgggatgatgaaggctgcaca 260

                                                                       
Query: 61  cccttgattaaggtagctattggccatctgttttgacatgaaatggatagaggttgtcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttgattaaggtagctattggccatctgttttgacatgaaatggatagaggttgtcct 320

                                                                       
Query: 121 tgtttggtttctcttgctgtgataaaacactgaccaaaaacaactcaggaaaggaagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttggtttctcttgctgtgataaaacactgaccaaaaacaactcaggaaaggaagtgg 380

                                                                       
Query: 181 ttatttggcttacatttacacatcacagatcattctcaaggggaaccagggcaggagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatttggcttacatttacacatcacagatcattctcaaggggaaccagggcaggagctc 440

                                                                       
Query: 241 aaatcaggaactggagggaagaactgaactggagttcacaggagaatgcagcttttccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatcaggaactggagggaagaactgaactggagttcacaggagaatgcagcttttccat 500

                                                 
Query: 301 ggcttctaccaagccttgctcaggtgtttactttttgt 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcttctaccaagccttgctcaggtgtttactttttgt 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)