BAC Information

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BAC

Clone NameMSMg01-158M12
Chromosome8 (Build37)
Map Location 88,842,620 - 88,842,925
singlet/doubletsinglet
Overlap genenone
Upstream geneD830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
Downstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158M12.T7 (MSMg01no158_m12.b1)MSMg01-158M12.TJ (MSMg01no158_m12.g1)
ACCAG358898AG358899
length713715
length of high quality
(start - end)
316 (31 - 346)91 (62 - 152)
definitionCHROMAT_FILE: MSMg01no158_m12.b1 PHD_FILE: MSMg01no158_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:22 2005CHROMAT_FILE: MSMg01no158_m12.g1 PHD_FILE: MSMg01no158_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTCTCAGC
AACTCTTCTTTCTGACTCACTCTTTTTGAGGCAGTTCAAGTGGAAAAATA
TGCTTAGCTGCGAGTGTAAAACCCTCATTCAGCAACAACAATAAAACCCT
TTAGTTTAATGCAAGGGCCTAAGTGAGCTTCATTTTTCACGTACATTATT
TAGCATAATCATATCTACTGTTTGTTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCGTTATTTTGTTTTAGAGACTCTTTCTTCCAACCTCCT
CAAAAAAATGTTTTAGCTCTGTGGAGCATTCATCTTTTTTTCTTACTCTT
CTCTCCCCCACCCCCCATAAAAAAAATCCCCTTGGGCAAGAGGTTCCACC
CCCACCGAACAACAACAATGAACAGTTTTCTGTAAATATTGCATAATCAT
ATCCGGGTGAAAGTGATGCTCTTGTATCTGAATTCTTGGTAGCCTGCCCT
GAAGACAGCCCATGCTGGGTCCCCCACCAAACTGATACAGATTCCAGCAT
CTGAACACCTCTCTTGTTCCAGCTTCCTTCTTTTTTCCTTAGTGTGATTC
CTACATGACCTTGGAGCCAGACTCTGACACTTAGTATCTATTTGACCTTG
GATAAGATACTTATCTCTGGCTTATTATCTTCATCTATAAACTGAACCGT
GGAACCTAACTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCTTCTTATTGCTGACTGACAAGAGAAGTGGATGGGA
AACACATTTTTGGACAGGTGAACTCCCAACTCCACAAGAGTTATCTTCCT
TGGGTCAAGACTTGGTCTCAGTAGCATAGCCTGATAAATTCTAAGTCAAA
TACATTACCTAGCACGTGCCAGCCACTGCCCAAGCTGACACCAGGAAGCT
GTCTCAAGATTTGATTACTTAAATCTAATAGGTACTGGGGAAGCTACTAA
GTTCTGGGCATTGTGGTTCACTAGGTCTCTGAGATGATCAACATCCATAT
TTTTCCCCACCCCCCGCCAGGCAGGTTTGTAAAAACAAACTAATATGTGA
AACCCCCTTATAAAAAGGAACAGAGAGCTTCATTGCAGAAGTCTGAGGGT
GTTAGGGGTCGAGAAGACCTCCATAGAGATAGTGCCCCTTGAGTTGGCTT
TGGGTGCAATTTAAGTAAGCAGGCGTGGGAACATTCAAGACTTTAGGATT
GCAAAGCGCCTTTTCTGGGCTTATCTCCCGCACTAAAACCTTCTACAAGC
CATTGAAAATTACTTTAGCCATCCCCCTCCCTGGTAGCCTTTTCCACTTC
TGCTCCCAACCTTGGCCAACTTCTCTTCCCCCCATTTCTGCCTCTGGAAA
CACTTGATTGCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_m12.b1 MSMg01no158_m12.b1 CHROMAT_FILE:
MSMg01no158_m12.b1 PHD_FILE: MSMg01no158_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:22 2005
         (316 letters)



>mm_chr8_88842416_88843131
          Length = 716

 Score =  569 bits (294), Expect = e-166
 Identities = 305/312 (97%), Gaps = 6/312 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattctcagcaactcttctttctgactcactctttttgaggcagttcaagtgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattctcagcaactcttctttctgactcactctttttgaggcagttcaagtgga 264

                                                                       
Query: 65  aaaatatgcttagctgcgagtgtaaaaccctcattcagcaacaacaataaaaccctttag 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaaatgcttagctgcgagtgtaaaaccctcattcagcaacaacaataaaaccctttag 324

                                                                       
Query: 125 tttaatgcaagggcctaagtgagcttcatttttcacgtacattatttagcataatcatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttaatgcaagggcctaagtgagcttcatttttcacgtacattatttagcataatcatat 384

                                                                       
Query: 185 ctactgtttgttctctctctctctctctctctctctctctctctctctcgttattttgtt 244
           |||||||||||||||||||||||||||||||||||||||||||      |||||||||||
Sbjct: 385 ctactgtttgttctctctctctctctctctctctctctctctc------gttattttgtt 438

                                                                       
Query: 245 ttagagactctttcttccaacctcctcaaaaaaatgttttagctctgtggagcattcatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttagagactctttcttccaacctcctcaaaaaaatgttttagctctgtggagcattcatc 498

                       
Query: 305 tttttttcttac 316
           ||||||||||||
Sbjct: 499 tttttttcttac 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)