BAC Information

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BAC

Clone NameMSMg01-158P05
Chromosome8 (Build37)
Map Location 27,887,817 - 27,887,943
singlet/doubletsinglet
Overlap genenone
Upstream geneBag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
Downstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158P05.T7 (MSMg01no158_p05.b1)MSMg01-158P05.TJ (MSMg01no158_p05.g1)
ACCAG359020AG359021
length731772
length of high quality
(start - end)
132 (45 - 176)277 (83 - 359)
definitionCHROMAT_FILE: MSMg01no158_p05.b1 PHD_FILE: MSMg01no158_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:34 2005CHROMAT_FILE: MSMg01no158_p05.g1 PHD_FILE: MSMg01no158_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGGAAAATCATCCCTCGTCCTGCCCCACCCAAAAAACTGTCGTGA
AGTTGTGGATTCTGAGGACAGTGGAAGAATGTAGGCCATAGATGAAAATT
CACCTCCTGTGTCTTTCATGAAGGATGACATGGCCTACCATAACGTCTTT
AACACGGAGCAGACATGGCATAAAGTCGGACTGCTCACAAAGCCCTGGGG
GCCGCATACACTGCCTGTTGTCAGTCATAGGATGAACATGACAGCTTTCT
GCAGCCTTCTTGCACAAGAGAGTTTAAACCCTGCACAGGTAACAGAAAAG
TCTCCGTTTTTTTTTTTGTGCCCCGCCCCCGCCATGTCTTGTCATCTGTG
CAAAACGATAACCTCGCCCCCCCAAAAAAAAAGAGTTCTGAGCCCCATCG
CCGTTTCCTACCAGACCATTTCCTGACCTTACTGAACGTCCCTTGCACCT
GTCCACGTACTCCGCGCGCTCTCTTAATCCTTTTCCCACTCGCTCTTCCC
AGTCCCCCGCCCGAAATTTGGCCTCTCTTCTCCGTCCCCCGCCCTTATAG
TGTCACCCCCTATCCCCAGTTCTTCCCTCCCCCTTCCCCCGACCCTTACC
CTCCTGTTCGCCCACCTTTCGCTCCCCGCACCCCTAGTACTCCCCTCGTC
CTCTTCCTCCCCCCATTTCTCCTCCCTCTCA
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATTGGACCGACTTTGA
GGCAGAAGCTGATGTTTCCTGGAGGATGAAAACAGAGAAACAATCAAACT
AAACAAAACCCTTCCTGGCCCTGGGGAGATGGCTTATCAGATAAAAATCC
CCAGTCTTCAGGGCGATGACCTGAGTTCGATCTCTGGAACACACATTAAT
GCCACACTCAATGACACATGCCTGTAACCCCAATACTTTTATGGTGAGAT
GAGAGGCAGAAAGAATATCCATCAGCTTATAGGCTGGTTAGCTTGGAACA
TGAAGGACTTTTTTTTACCCCCCCCACCCTGGCTCTGCTGGTCATGTCCA
TGCACATCTATCACCCCCCCACACAAAAAGCAGAGACAGGCAGATCTCTG
AGCTCAAGGCCAGTCTTGTCTACAGAATGCAATCCAGGATAGCCAGGGCT
ACAGGGGTGAGGGTGGGGGGTAATTTATTAATTACTTATTTTTCCATATC
TCCTAATCTTTATCTATTATACACCTCTATATTCTCTTATCCTTACTACA
AACTATATAATTATTTCCTCTTACTACCTTCTTAATCACACACTTTAATT
TTATTCCCCTAACATACCATCTATTAATTCATTCTCCCCTTTCTCTTACT
CTTTTTCGTGAACCAACGTTCCTCTTCACAATTAACATATCTTTCATTAT
TTTAACTCAAATACACCATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_p05.b1 MSMg01no158_p05.b1 CHROMAT_FILE:
MSMg01no158_p05.b1 PHD_FILE: MSMg01no158_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:34 2005
         (132 letters)



>mm_chr8_27887613_27888143
          Length = 531

 Score =  176 bits (91), Expect = 4e-49
 Identities = 119/129 (92%), Gaps = 3/129 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggaaa-atcatccctcgtcctgccccacccaaaaaactgtcgtgaagttgtg 63
           ||||||||||||| |||||||||| ||||||||||||| ||| |||| | ||||||||||
Sbjct: 205 gaattcttggaaacatcatccctcatcctgccccaccccaaatactgccatgaagttgtg 264

                                                                       
Query: 64  gattctgaggacagtggaagaatgtaggccatagatgaaaattcacctcctgtgtctttc 123
           ||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||
Sbjct: 265 gattctgaggacagtggaagaatgtaggctatagatgaaaat--accacctgtgtctttc 322

                    
Query: 124 atgaaggat 132
           |||||||||
Sbjct: 323 atgaaggat 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 531
Length adjustment: 8
Effective length of query: 124
Effective length of database: 523
Effective search space:    64852
Effective search space used:    64852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)