BAC Information

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BAC

Clone NameMSMg01-159D08
Chromosome8 (Build37)
Map Location 12,616,078 - 12,750,029
singlet/doubletdoublet
Overlap geneTubgcp3
Upstream geneAnkrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik
Downstream geneAtp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159D08.T7 (MSMg01no159_d08.b1)MSMg01-159D08.TJ (MSMg01no159_d08.g1)
ACCAG359213AG359214
length712713
length of high quality
(start - end)
310 (50 - 359)284 (80 - 363)
definitionCHROMAT_FILE: MSMg01no159_d08.b1 PHD_FILE: MSMg01no159_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:53 2005CHROMAT_FILE: MSMg01no159_d08.g1 PHD_FILE: MSMg01no159_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,616,078 - 12,616,384)(12,749,750 - 12,750,029)
sequence
GTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCGGATCCTCTTGTTCTCCTCCTCTTCCTCTGCCGCAGTCA
CTCCCCACTGGCCCTGGTTAGTGAGAAGCAGCAAGTTCAACTGCTGGATG
CTTCCCTGCTTCAGCACGGCAGCACTGTGCGTCACGCACTGTAGTGCAGA
GGCCCCACGTCCCCCACATGCCCTCATTCAGACAATGGGCATGGAAGGAA
CTTGCCAGTTCTGAGAGCTGGCATGCTGACTATAGTGAGAACGCCAGACA
ATCTGCCTTGGAAAGAAGCATCTACTCTCATTCTAAAAGGTCACTTTCAG
CCAGACACATTTGTATTCCACCCCCCCCCCCCCATCTGAGGCATGAGAAT
GGTTGAGGCCAGACTGGGCTACACACAAAGAGATCGTATCTTAACTATTC
CCTCTCCCCTCAAAATAGATTTTTCAGTAACACCGTTGTTCAGCCAGCCT
GAATGGGAGTTACTGAGTTCTCTTCTCATGAGTGAATACGGTAAATTGCA
TCTACTAGCTCTTCTGATCGGAGCCTTGGCACTCCTGGCATAGACTCTGG
GCTTGGGAACTGCACTGTGCTAGGGCCTCTCGCTTGCGCGCTTTAAGAGT
TGCCCACTGGCACTCAGAACCGAGGCTGCTCTTTCTGAATCTCACTGGCC
TCAGGTGCCCTA
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTGAGTTGCTTAGATCTG
GTAAGGAAGTCAGCGGCAGAGGCTTGTCTGGAGGCCGGTATTTTTACTTG
CAAACCTATAATTTCAAGGTCAATTTGGGGAAGGGGGTGTCTATTTCCCC
TAATTCCACAAGCTTACACTGGAAGACGCCCAGGCCCAAGGCAGGGTTCA
CGCAGAGCCACATTGGCTCCTAAGACCAGGCCTCCAGTTACATCATGTTT
CTCAAAGAGACATCAGTCACATGGTATCTCTCAGTTATGGCCACTCCAGC
CTCACCCCCTTTTTTTATTCCCCCCCCCCCCGACCTACTGACATGAAGTC
AGTCTCTGTCACCTGTTCAGCCCTGAAACATAAAAGGGCTGGACTGGAAT
CTCTTTCTAAAGCTTTCCCTCCAGGTTCATCCTTCCTGGAGGAAGAGAAC
CACAAATATGGCTCTGGTGCCAGGCAAAGGGACCAGACGCCCTTCAACAA
ATCCCTCAGGACTCCAAGCTCTGTCATGTGTTGGGGACAGTGATACCACC
TAGCTCTTGGATTGTTTTGAAGAGTGAATGAATTACTCAAGGCTTAGCTC
AAGTGGGCACCTACCCAAGCAATCTCACCACTCTCGCTGAGCATGGCCCC
TCTCCTGCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_d08.b1 MSMg01no159_d08.b1 CHROMAT_FILE:
MSMg01no159_d08.b1 PHD_FILE: MSMg01no159_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:53 2005
         (310 letters)



>mm_chr8_12615875_12616584
          Length = 710

 Score =  571 bits (295), Expect = e-167
 Identities = 304/307 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcggatcctcttgttctcctcctcttcctctgccgcagtcactccccactggc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcggatcctcttgttctcctcctcttcctctgccgcagtcactccccactggc 263

                                                                       
Query: 64  cctggttagtgagaagcagcaagttcaactgctggatgcttccctgcttcagcacggcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctggttagtgagaagcagcaagttcaactgctggatgcttccctgcttcagcacggcag 323

                                                                       
Query: 124 cactgtgcgtcacgcactgtagtgcagaggccccacgtcccccacatgccctcattcaga 183
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 cactgtgcgtcacgcactgtagtgcagaggcctcacgtcccccacatgccctcattcaga 383

                                                                       
Query: 184 caatgggcatggaaggaacttgccagttctgagagctggcatgctgactatagtgagaac 243
           |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 384 caatgggcatggaaggaacttgtcagttctgagagctggcacgctgactatagtgagaac 443

                                                                       
Query: 244 gccagacaatctgccttggaaagaagcatctactctcattctaaaaggtcactttcagcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gccagacaatctgccttggaaagaagcatctactctcattctaaaaggtcactttcagcc 503

                  
Query: 304 agacaca 310
           |||||||
Sbjct: 504 agacaca 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_d08.g1 MSMg01no159_d08.g1 CHROMAT_FILE:
MSMg01no159_d08.g1 PHD_FILE: MSMg01no159_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:53 2005
         (284 letters)



>mm_chr8_12749550_12750233
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 277/280 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacctgagttgcttagatctggtaaggaagtcagcggcagaggcttgtctggaggccggt 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 480 aacctgagttgcttagatctggtaaggaagtcagcggcacaggcttgtctggaggccggt 421

                                                                       
Query: 61  atttttacttgcaaacctataatttcaaggtcaatttggggaagggggtgtctatttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atttttacttgcaaacctataatttcaaggtcaatttggggaagggggtgtctatttccc 361

                                                                       
Query: 121 ctaattccacaagcttacactggaagacgcccaggcccaaggcagggttcacgcagagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctaattccacaagcttacactggaagacgcccaggcccaaggcagggttcacgcagagcc 301

                                                                       
Query: 181 acattggctcctaagaccaggcctccagttacatcatgtttctcaaagagacatcagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 300 acattggctcctaagaccaggcctccagttacatcatgtttctcagagagacatcagtca 241

                                                   
Query: 241 catggtatctctcagttatggccactccagcctcaccccc 280
           |||||| |||||||||||||||||||||||||||||||||
Sbjct: 240 catggtgtctctcagttatggccactccagcctcaccccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)