BAC Information

Click to search

BAC

Clone NameMSMg01-159E10
Chromosome8 (Build37)
Map Location 34,036,421 - 34,036,735
singlet/doubletsinglet
Overlap geneLOC100042715
Upstream gene2010007E15Rik, EG666589, EG546052
Downstream geneLOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159E10.T7 (MSMg01no159_e10.b1)MSMg01-159E10.TJ (MSMg01no159_e10.g1)
ACCAG359262AG359263
length739852
length of high quality
(start - end)
318 (44 - 361)67 (74 - 140)
definitionCHROMAT_FILE: MSMg01no159_e10.b1 PHD_FILE: MSMg01no159_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:58 2005CHROMAT_FILE: MSMg01no159_e10.g1 PHD_FILE: MSMg01no159_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCAGTTCTAGAAGTAC
CTCAACTTACATTATTACATAAATACTTTTCCTTTTGGAATATTACTAAG
TGAATAATTGTACAAACTGTCTAATCTCTCTTTGCTGTTAGTTTCCATAA
TTAAATTTCCCAACGAATTTACAGTGCAATAATATCTTAAGTCTAATAGC
TCATTTCTGAGCAACTTTAATTTAATTTAAAGATACTGGCCTAAGGTAAG
TTCTTCTCAAATATTAGAAAATTCTCCTTACAGTTAAGCATCTATATGCA
GCCTTTGGAATGTATTTTTTCACACCACCCCACCCATCATTCCTTACTTA
CTCTTTTCATTAACAACCCCGGAATAAATAACCTTGACACCGGTTTATAG
TTCTCATTATTATTGTGGAGAATTCCTTATATGCACGTATCATCCTGCAT
ACAGTCAGCTCCCTAATGAAATTTTAAATAGAATTCTTTGTCCATTTAAT
AAGATTGATATCGATGACCCTTTTCGTGTATGTATTTTATTCATTGAACT
TTCCGGCATTTTCGAGCCACTCCAATGTTCACATAGGTGAGTGCTTCGTA
AAGTCCTCGGGAGTATACTCTGTGTCACCATAGCTGTTAGCATAACTCAG
ATCCACTTCCACAGGCCTCTTCAGATTTGCCGTAATGCC
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGAAACTTCTTAAAGGGTGTGTAAAT
GCTAAAGCCCCAGTAAATGGAAGGTTGTTGGTTGTTCAGGGGTGGAAGTT
GTTACNTCTTTTTTTTTAAAAAAATATAAACCTATACTCAACTCCATTTT
ATTACCCTTTTATCAACACATAATAACACAACCAACATAATTTTACTAAA
ATCCCCATTTACTTTTTTTTATTTTCATTCTCTTTTTATTTCTCCCCCCT
TTTTCAATTTTCTTTTCTCTTTTTTTCTTTTTTTTTCCCCCACCCCTCTC
TCTAAAAATTATAAAAAAAAGTATATTTTTTTTTTTCCCCCCCCCCCCCC
CCCCTTTTTATCCCACTAAATATTTTTTTTTTCCCTTCTCCCCCCCCGCA
AAAAAAAAAAAAATAAAATACCCCCCCGCCCCATACCTCCACCACAACTT
TATTAACACACCCCCCCCCCCATCCCCCCTTTTTTTTTTTTAATCCCCCC
CCCCTCCTCCTTATATACATAATCAATATTCTAAAAAATTCTCCTACTTA
TTATATTTATAAAATAATTCCCCACCCCACCCTCATTACATTTTTTAAAT
TTATTTTAATTTATAATTAATTCTCACCCACCCTTTTCTCTTTTATTTAA
CACACATTATATACCCTACTATCTTTTTATTACCCATTATTTCTTCCTTC
TCTCCCCCCCCACTTTTTTTTATATTTTTATCCACCACCTATCACCTCAC
CCCTTTTTCTTTTTTCTATCTTTTATTTCTCTTACCTCTCTCTCTCACCT
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_e10.b1 MSMg01no159_e10.b1 CHROMAT_FILE:
MSMg01no159_e10.b1 PHD_FILE: MSMg01no159_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:58 2005
         (318 letters)



>mm_chr8_34036181_34036898
          Length = 718

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtcagttctagaagtacctcaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggaattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtcagttctagaagtacctcaac 496

                                                                       
Query: 64  ttacattattacataaatacttttccttttggaatattactaagtgaataattgtacaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttacattattacataaatacttttccttttggaatattactaagtgaataattgtacaaa 436

                                                                       
Query: 124 ctgtctaatctctctttgctgttagtttccataattaaatttcccaacgaatttacagtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctgtctaatctctctttgctgttagtttccataattaaatttcccaacgaatttacagtg 376

                                                                       
Query: 184 caataatatcttaagtctaatagctcatttctgagcaactttaatttaatttaaagatac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 caataatatcttaagtctaatagctcatttctgagcaactttaatttaatttaaagatac 316

                                                                       
Query: 244 tggcctaaggtaagttcttctcaaatattagaaaattctccttacagttaagcatctata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tggcctaaggtaagttcttctcaaatattagaaaattctccttacagttaagcatctata 256

                          
Query: 304 tgcagcctttggaat 318
           |||||||||||||||
Sbjct: 255 tgcagcctttggaat 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)