BAC Information

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BAC

Clone NameMSMg01-159K06
Chromosome8 (Build37)
Map Location 105,444,932 - 105,622,454
singlet/doubletdoublet
Overlap geneLOC100041368
Upstream geneCdh11, EG667618
Downstream gene1600027J07Rik, LOC100041397, LOC667656
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159K06.T7 (MSMg01no159_k06.b1)MSMg01-159K06.TJ (MSMg01no159_k06.g1)
ACCAG359524AG359525
length720725
length of high quality
(start - end)
316 (47 - 362)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no159_k06.b1 PHD_FILE: MSMg01no159_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:24 2005CHROMAT_FILE: MSMg01no159_k06.g1 PHD_FILE: MSMg01no159_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,622,145 - 105,622,454)(105,444,932 - 105,445,215)
sequence
AATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTTCCATGGGGAACTCTTCTGTAATACAGAGTTTGGTGAAGTT
TGGAGGGAGGCCCTGGTCTTGCTATTGAGTGAAACCATATATGAATCAGA
CCATGCTTATAGTCGCCATATTTCTAAATACTGCATGATATCAATGCTAA
CCCCTGCCTAATTGGCAGGTTTCTGAGTAACAGAGACACTGTCCCAATTT
TCTTATTCATTCCCCATGTTATTGGTTTTTGCAAGCATGCTATTCTTAGG
ATTATTTTCTTCTCAGAGGAAAATGTTTCTGCCCATTTCTCTGTGAGCAG
CTTTGCCTGATTAATAGATTCTATCCTAAACCCATTTACAAAAAAGAAAA
AAAAAGGTGTCCACAGCCCCAGTTATAAAATTAAAGTGACATATTTACTT
CCTTACTTCCTATAGAACATGCATTCTACTATATCCCCCAGCACCAAACA
CTAGATCTGACAATTGGAAGATGATTCAAAAGCATTTATTGATGAGGCAG
ATGGAGACTCTGAACTGCACACAGTGCTGTCTACCTGTTATGACATTATC
CCTGAAAACTCAGTGCTCTAATTTTGTTAGCATCCCCCTGACTCACTAGC
ACCAAGCGTAGGCAACCCAGTAAGTTATAAACTCACTCTCTGCTTGACTT
CAGGCTGCAAGGTATGAATA
TCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAAGATATTAGTCTTACAA
GTCAACAGTCTATGTGGTATGATTCCATTTGGTTCTGGTTGTGTGATCAT
GAATGATTTGATATCATCTGAGCCCCAGTGTTCAAATATATAGTGGGTTA
CAGAAATATGAGCATTGCAAAGTTTTGCACAAGGATTAATCATTAGAGTA
TGCGTAAAGGTACACTTAATACTTCCAATAAGTTATTAACTCAAGCATTC
TGTCAATGCAATAGAAAATCTAACTCAGCATATTTTTATATAAACATGGA
ATAAACATGTTTTTGATTAGTACCTCCNTGACTGACCCGTGGGGAGAAAT
GATAGGAACTATAGAATGCACCCCAAGCGCAAAAGAGCATGTATGGTATA
TCTTTAAACAAAGAAGAGAGCTGACCAGAAGTCATATAGCTCAGTAAAGG
CAAGTGTAAGTCTCAATCTGTTGTGCAGATTAAGCCCCATGCTCAGCTAG
CCATCAACAGAATGCTTCTGTAGTGTAATTAGACCAGGTGGATGAAAGAC
AAGTCTGATAGTATTTTTGACCTCAATGGCTCAGAGGTAAGGGTTATATT
CTGAATTTCATTCTCACAGTGTGCAAGGTAAATGCTGCTTCCATACTTAC
TGTGAAAGTTGAATGCTACACAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_k06.b1 MSMg01no159_k06.b1 CHROMAT_FILE:
MSMg01no159_k06.b1 PHD_FILE: MSMg01no159_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:24 2005
         (316 letters)



>mm_chr8_105621941_105622656
          Length = 716

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttccatggggaactcttctgtaatacagagtttggtgaagtttggagggagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcctttccatggggaactcttctgtaatacagagtttggtgaagtttggagggagg 455

                                                                       
Query: 65  ccctggtcttgctattgagtgaaaccatatatgaatcagaccatgcttatagtcgccata 124
           ||||||||||| |||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 454 ccctggtcttgttatttagtgaaaccatatatgagtaagaccatgcttatagtcgccata 395

                                                                       
Query: 125 tttctaaatactgcatgatatcaatgctaacccctgcctaattggcaggtttctgagtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tttctaaatactgcatgatatcaatgctaacccctgcctaattggcaggtttctgagtaa 335

                                                                       
Query: 185 cagagacactgtcccaattttcttattcattccccatgttattggtttttgcaagcatgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cagagacactgtcccaattttcttattcattccccatgttattggtttttgcaagcatgc 275

                                                                       
Query: 245 tattcttaggattattttcttctcagaggaaaatgtttctgcccatttctctgtgagcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tattcttaggattattttcttctcagaggaaaatgtttctgcccatttctctgtgagcag 215

                     
Query: 305 ctttgcctga 314
           ||||||||||
Sbjct: 214 ctttgcctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_k06.g1 MSMg01no159_k06.g1 CHROMAT_FILE:
MSMg01no159_k06.g1 PHD_FILE: MSMg01no159_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:24 2005
         (286 letters)



>mm_chr8_105444732_105445417
          Length = 686

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaaagatattagtcttacaagtcaacagtctatgtggtatgattccatttggttctg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaaagatattagtctcacaagtcaacagtctatgtggtatgattccatttggttctg 260

                                                                       
Query: 61  gttgtgtgatcatgaatgatttgatatcatctgagccccagtgttcaaatatatagtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtgtgatcatgaatgatttgatatcatctgagccccagtgttcaaatatatagtggg 320

                                                                       
Query: 121 ttacagaaatatgagcattgcaaagttttgcacaaggattaatcattagagtatgcgtaa 180
           |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ttacagaaatatgagcattgcagagttttgcacaaggattaagcattagagtatgcgtaa 380

                                                                       
Query: 181 aggtacacttaatacttccaataagttattaactcaagcattctgtcaatgcaatagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtacacttaatacttccaataagttattaactcaagcattctgtcaatgcaatagaaa 440

                                                       
Query: 241 atctaactcagcatatttttatataaacatggaataaacatgtt 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctaactcagcatatttttatataaacatggaataaacatgtt 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)