Query= MSMg01no159_o23.b1 MSMg01no159_o23.b1 CHROMAT_FILE:
MSMg01no159_o23.b1 PHD_FILE: MSMg01no159_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:45 2005
(681 letters)
>mm_chr8_110787226_110788306
Length = 1081
Score = 1294 bits (669), Expect = 0.0
Identities = 675/677 (99%)
Strand = Plus / Plus
Query: 5 gaattcaagagcaaggactgtagaagtctcagcctttcagcaaccttactaccaaggaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagagcaaggactgtagaagtctcagcctttcagcaaccttactaccaaggaaa 264
Query: 65 attccaccatgctcaccaaattctactgaatcgaaatacttcactaagtcctgatcaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attccaccatgctcaccaaattctactgaatcgaaatacttcactaagtcctgatcaaag 324
Query: 125 ccaaggaaagagacgacataaggattctacttcctgggatgattatgggttatctcaggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaaggaaagagacgacataaggattctacttcctgggatgattatgggttatctcaggc 384
Query: 185 actgttgatcgtagtaggttcccttgcctgtgtacatataatgttggggcagaagatgct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actgttgatcgtagtaggttcccttgcctgtgtacatataatgttggggcagaagatgct 444
Query: 245 gctaaataggagatcatagaagcaactctctttcaaagtgacaccactagcctccatttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctaaataggagatcatagaagcaactctctttcaaagtgacaccactagcctccatttc 504
Query: 305 aagaggatgcctcagccggtgagtatggcctcttctggggaaagctttagcagttaccat 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagaggatgcctcagccggtgagcatggcctcttctggggaaagctttagcagttaccat 564
Query: 365 ctgctccctcagcaacacacaaacctcctgcctttccagcctgaactctgtgaaatcgtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgctccctcagcaacacacaaacctcctgcctttccagcctgaactctgtgaaatcgtg 624
Query: 425 atggatttctgagaaaatgaagcaagtgtctagcctggctctgggcacctctgatggccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atggatttctgagaaaatgaagcaagtgtctagcctggctctgggcacctctgatggccc 684
Query: 485 agttgctttctcaacaggatcagagggaaggagtgtgtctgtggagtcaagaaaactctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agttgctttctcaacaggatcagagggaaggagtgtgtctgtggagtcaagaaaactctg 744
Query: 545 gcttgatgggggaaatgaaccccacttttgactcacatatgggaatggatgcttaaattc 604
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 745 gcttgatgggggaaatgaaccccacttttgactcacatatgggaatgggtgcttaaattc 804
Query: 605 actaaaatccctctagaatggtatccctttatgtctctttcagtggggattgtcggatgg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 actaaaatccctctagaatggtatccctttatgtctctttcagtggggattgtcggatgg 864
Query: 665 atataaccgaggagata 681
|||||||||||||||||
Sbjct: 865 atataaccgaggagata 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_o23.g1 MSMg01no159_o23.g1 CHROMAT_FILE:
MSMg01no159_o23.g1 PHD_FILE: MSMg01no159_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:45 2005
(587 letters)
>mm_chr8_110924993_110925979
Length = 987
Score = 1093 bits (565), Expect = 0.0
Identities = 582/589 (98%), Gaps = 4/589 (0%)
Strand = Plus / Minus
Query: 1 tcacttagaaagccccagcgatgagcctccaacctgatgtaccaacctgggaaagagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tcacttagaaagccccagcgatgagcctccaacctgatgtaccaacctgggaaagagcat 629
Query: 61 tttcttcccttcaggacatagttacatgtagttaggggttttttt--ccccttcacaagg 118
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 628 tttcttcccttcaggacatagttacatgtagtta--ggttttttttcccccttcacaagg 571
Query: 119 cagatgctcaaagcaaagagtgtgaagtagcagggatttgggcactgtgtacaactcccc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cagatgctcaaagcaaagagtgtgaagtagcagggatttgggcactgtgtacaactcccc 511
Query: 179 ctagggtatccctggggatgaagcctttgcatcgcagtgacagaaaacctggctgtaagg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctagggtatccctggggatgaagcctttgcatcgcagtgacagaaaacctggctgtaagg 451
Query: 239 acggtgaccatggcatcttagggattttctctttctgtgagtgtatgtacgttccatctc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acggtgaccatggcatcttagggattttctctttctgtgagtgtatgtacgttccatctc 391
Query: 299 tctcttctctttactcccagaatccctctctccttcccctccctctctcatatacatctc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tctcttctctttactcccagaatccctctctccttcccctccctctctcatatacatctc 331
Query: 359 tcccacacaaagatttgcatgcacaagctgtacatgagggtgacttttgcaagcacacac 418
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcccacacaaagatttacatgcacaagctgtacatgagggtgacttttgcaagcacacac 271
Query: 419 acagcagtgacacactctatttcctatctctgtcgctatgcccaggatattttaaagtaa 478
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acagcggtgacatactctatttcctatctctgtcgctatgcccaggatattttaaagtaa 211
Query: 479 gccatgggaaccaccccactgcctcctatggtataaataaagttttattgaacatagaca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gccatgggaaccaccccactgcctcctatggtataaataaagttttattgaacatagaca 151
Query: 539 tgcacattcatttctgtatcctctttggctgttttcgtcctataactgg 587
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tgcacattcatttctgtatcctctttggctgttttcgtcctataactgg 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
