BAC Information

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BAC

Clone NameMSMg01-160D14
Chromosome8 (Build37)
Map Location 24,337,406 - 24,337,715
singlet/doubletsinglet
Overlap geneGins4
Upstream geneRpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6
Downstream geneGolga7, Sfrp1, LOC100040931, Zmat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160D14.T7 (MSMg01no160_d14.b1)MSMg01-160D14.TJ (MSMg01no160_d14.g1)
ACCAG359953AG359954
length739821
length of high quality
(start - end)
314 (47 - 360)175 (76 - 250)
definitionCHROMAT_FILE: MSMg01no160_d14.b1 PHD_FILE: MSMg01no160_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:07 2005CHROMAT_FILE: MSMg01no160_d14.g1 PHD_FILE: MSMg01no160_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCATCGACGCCTTTCCACGTCCAAGTGGTCCACACATTGCTGA
CGAACTGTATGGAACATGACTTCACTATTAGACACAAAAGATGGCATTTC
TAATATTGTCTGTGACCACTCCATGTCCTCAGGCTTGCTTTGTTTTATAT
TAGCTGAACTGCTCCAGAAGCAACAAGAGGTGCGATGGTTTTGTATCGGA
TCAAGTGCTGTGAGCCCACCTCCAAGTCAATCACGTAGTCTCTGAAAAAG
GATGAACAGTTGTATGTATGGCGTTTAGCTGATTCTCCATGGGGAAGAGC
CACACGCTATTCACCTCTGCTCCCCGCCTTCTGGTTCTACTAGTATGTTT
TCTTGTCGTTCCCCCACTCGCAGAAACACATATGAATCTAGGTCTGGTTT
GGGAACTGCCAGGAAAACAAAAGTGTAACCAAAAGCAGCTGGTATGTTCG
ACTTGACTAAAGCCACTAGCATCAATGCTCTGGAGGCTCCTGATGTACAG
GAGCTGCTCATCCAACAAATGCCACAGCCTTACCATGCCTAGGGCATGCG
CCTGGGCAGCAGCTTCCGATTTTGATAGGGATCCATTTCAAGAACCCCAG
TAAATAGTACTGTATCATTTACACACACACACACACACACTCACTCTTAC
TCACACACACATTACTCACACTAATTTCTTCGCACGTGT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCCTCCTGAGTTCTTTACTCT
ATATTTAACCTCTGTGGTTACATAGATTACAGATTGCTGGCCAGTGATTT
AATAGCTAACTCTCACATATAAGCAAATATATATGCTATATTTGTCTTGC
TGGGTCTGTGTTACTTCATTAGATTTTTGTAGGGGTTTTTTGTTTGTTTG
GGTTCTCNCCCCTCTCCCATCTCCTTTTATTTTATGCTCTTCCTCTATCC
CCCTTCTTAACCCCTTTTTTTTTTTTTTTTTCTCCTCTCTTTCCAAAAGA
GATTTTTAAATAATTTCCCAAAACAAACCCCTTATATTTTTTTTTTATGT
TATTTATTTTTTCCCCCCCCCAAAAAAAAAAAAAAAAAATTGTGTTGGTG
GGGTGTTCTCTATATCCAATCATTATACTTATTCCTACATACTTATTCTT
ATTTTATTTTTCTTATTTACTTCTTTCCTCAATACTATCTCTATCTTATC
CCATCTTTTTTTTACTTTTTTTTCTATTTTTATATTTATTTTTATTTCCT
TCCTCCTTAATCACTACCAACATCAGCCCTCTTTCTTTATCTATTTACTT
CTTTATTCTACCCCTTTATTATTAATCCCGTTATCATCTCTTTCACAAAC
TTAATCTAATAACATATATATATATATATTCGTTAATTTCTCTTTCCGTC
ACATTATTTTATTCTTTACTTCCCTAATCTACCCTCCTTCTACTTCTATT
TTTATTTATTTGTCATACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_d14.b1 MSMg01no160_d14.b1 CHROMAT_FILE:
MSMg01no160_d14.b1 PHD_FILE: MSMg01no160_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:07 2005
         (314 letters)



>mm_chr8_24337203_24337916
          Length = 714

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgcatcgacgcctttccacgtccaagtggtccacacattgctgacgaactgta 63
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgcatcggcgcctttctacgtccaagtggtccacacattgctgacgaactgta 263

                                                                       
Query: 64  tggaacatgacttcactattagacacaaaagatggcatttctaatattgtctgtgaccac 123
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 264 tggaacatgacttcactattagacacaaaagatggcgtttctaatattgtctgtgaccac 323

                                                                       
Query: 124 tccatgtcctcaggcttgctttgttttatattagctgaactgctccagaagcaacaagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tccatgtcctcaggcttgctttgttttatattagctgaactgctccagaagcaacaagag 383

                                                                       
Query: 184 gtgcgatggttttgtatcggatcaagtgctgtgagcccacctccaagtcaatcacgtagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgcgatggttttgtatcggatcaagtgctgtgagcccacctccaagtcaatcacgtagt 443

                                                                       
Query: 244 ctctgaaaaaggatgaacagttgtatgtatggcgtttagctgattctccatggggaagag 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 ctctgaaaaaggatgaacagttgtatgtatggcgtttagctgattctccatggggaaggg 503

                     
Query: 304 ccacacgcta 313
           ||||||||||
Sbjct: 504 ccacacgcta 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)