BAC Information

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BAC

Clone NameMSMg01-160G24
Chromosome8 (Build37)
Map Location 73,064,820 - 73,240,545
singlet/doubletdoublet
Overlap geneEll, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik
Upstream geneLOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8
Downstream geneLOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160G24.T7 (MSMg01no160_g24.b1)MSMg01-160G24.TJ (MSMg01no160_g24.g1)
ACCAG360109AG360110
length832725
length of high quality
(start - end)
140 (45 - 184)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no160_g24.b1 PHD_FILE: MSMg01no160_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:23 2005CHROMAT_FILE: MSMg01no160_g24.g1 PHD_FILE: MSMg01no160_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,240,410 - 73,240,545)(73,064,820 - 73,065,101)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGACTGGCCAGAAGCCAGGCCGGCATCCACAGGGCCCTGGGATA
CAGTGGGGGGTAGGGATATCGTATTATGGCCAGTTTTGGGGTGTGTAACA
AGATGGGGTCTGTGGCTGTGGGGTGTGGTTCTGNNNCCCTGTTAACTCCC
ACCGAGGCTTGCCCCACCCACCCCGATGTGCCCCAACTCCACTTACCTTT
ACCCTGGCGCCTCCTCTCCCCCACCCCCCCCCCCCCCTTTCCACCCCCTT
TTTTCCTTCCTCCTCTTTTTTTTTTTTACCCCCCCCCCCTTGCTTTCCCC
CCAGGATTTTTAGATAACTCCCAAAGCGGAGCCCCTATGATTTGTTTATA
GAGAATTTTTTGTTTTTTTTTCCCCCCCCTTTAAAAAAAAAAAAAATGTG
TGGGTGGGGGGGTGGTTTATTTTCTATTTTATTTCCTTATCTCTCCTCCC
TCCTCCCATTACTTCCTTTCTACTCCCTCCTCCACATTTTCTTCCTCTCC
CCCCCCCTATCTCCACCTTCTCTACCCCCTCCCACACATTTTTTTCTCCC
CCTCCACACTCATTTTATTCTCTTCTTCTTATTTTGCTTTGTTCTCCCTT
CCCACTCCCTCCTCATCTTTTTTTACTCATCGTACATTTGTCCTTCTATC
CTCCACCTCTCCTCATACCCCCCTCCTCGCGCTTTATCTCTACTCCTCAT
CTCCTCTCCCTCACTCCTTATCCCTCCCTCCCCTTCCTTTTACTCCCCCC
TCCTCCCCCTTTTTTCTTCCCATCTGTTCTAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACCTGTAGTCTTTCCCCTTGGG
CCATTCTGACTAGTCCTGGAGAACCAGGGCTTTTCTCAGAAACAGCTGGG
CCAGAGCATGAGTCACTGCTGTCAGGTGAACTTGGTACCTGGTGGCAGTC
GCTGGCCCTTGCTCTGCCACCCCTACAGCCTTCTCCAGCACCGCTGTCAT
ACTGTTATTTTTAATTTTGCTGTGCATTACATCCCCTATCGAAGCCTGGT
CTTCCTCTTGTGAGGGCACTTGTGGAATTGCAGGCCACTGTGCTCGGGCC
CTGAGGAAGCCAGTTGCGCCTAGCTGTTTGACTACCAACCATAAGGGACT
CTGTGTCTTGTGCCCGACAGCATTCAGTTTTGGGACAGTCCAAACCTGTG
TTTATCTGGAAAGCTGACAGGGCACTTACTGGCAAGGCGACTTTGGAGTG
TAATCTGTGGTCAGCATCAGAGCTTCACTCTATCCTAGGCTGCTGTCAAA
CCCATGACTCTTGACTCTAGGTGCCAAGGTGGCAGGTAGGAACCACCATC
AGCCCAGCTTCAGAGACGCATATAGTTTGTTTCTTGGCGTTGTCTTCTCA
ATAGCCATTAATATCATCCCCCCTCCCCACTTATCATCTATTCTCATATC
TCTCTTTAGCTTTCTTTCAATACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_g24.b1 MSMg01no160_g24.b1 CHROMAT_FILE:
MSMg01no160_g24.b1 PHD_FILE: MSMg01no160_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:23 2005
         (140 letters)



>mm_chr8_73240207_73240746
          Length = 540

 Score =  263 bits (136), Expect = 3e-75
 Identities = 136/136 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatgactggccagaagccaggccggcatccacagggccctgggatacagtggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggaattccatgactggccagaagccaggccggcatccacagggccctgggatacagtggg 280

                                                                       
Query: 64  gggtagggatatcgtattatggccagttttggggtgtgtaacaagatggggtctgtggct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gggtagggatatcgtattatggccagttttggggtgtgtaacaagatggggtctgtggct 220

                           
Query: 124 gtggggtgtggttctg 139
           ||||||||||||||||
Sbjct: 219 gtggggtgtggttctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no160_g24.g1 MSMg01no160_g24.g1 CHROMAT_FILE:
MSMg01no160_g24.g1 PHD_FILE: MSMg01no160_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:23 2005
         (282 letters)



>mm_chr8_73064620_73065301
          Length = 682

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacctgtagtctttccccttgggccattctgactagtcctggagaaccagggcttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacctgtagtctttccccttgggccattctgactagtcctggagaaccagggcttttct 260

                                                                       
Query: 61  cagaaacagctgggccagagcatgagtcactgctgtcaggtgaacttggtacctggtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaacagctgggccagagcatgagtcactgctgtcaggtgaacttggtacctggtggc 320

                                                                       
Query: 121 agtcgctggcccttgctctgccacccctacagccttctccagcaccgctgtcatactgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcgctggcccttgctctgccacccctacagccttctccagcaccgctgtcatactgtt 380

                                                                       
Query: 181 atttttaattttgctgtgcattacatcccctatcgaagcctggtcttcctcttgtgaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttaattttgctgtgcattacatcccctatcgaagcctggtcttcctcttgtgaggg 440

                                                     
Query: 241 cacttgtggaattgcaggccactgtgctcgggccctgaggaa 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacttgtggaattgcaggccactgtgctcgggccctgaggaa 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)