BAC Information

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BAC

Clone NameMSMg01-160I08
Chromosome8 (Build37)
Map Location 27,192,544 - 27,192,744
singlet/doubletsinglet
Overlap geneHook3
Upstream genePlekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta
Downstream gene1700047A11Rik, Rnf170, Thap1, Zfp703, Erlin2, Prosc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160I08.T7 (MSMg01no160_i08.b1)MSMg01-160I08.TJ (MSMg01no160_i08.g1)
ACCAG360170AG360171
length726887
length of high quality
(start - end)
313 (23 - 335)201 (77 - 277)
definitionCHROMAT_FILE: MSMg01no160_i08.b1 PHD_FILE: MSMg01no160_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:30 2005CHROMAT_FILE: MSMg01no160_i08.g1 PHD_FILE: MSMg01no160_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTATAGGATCATGATTAA
GAATTAGGAAGTCATCTATTTGTCTATATAGCATCACTGCAAGACAGTAC
ATCTTCATAGTTCTGTAGCGATCTGCTCAGAAGGGGTGGGCTAATACCTA
GTGGTTATTATATATGTTTAATAATAACAGGAAAAGCATATTGATAGCAG
GAATCTTTCCTAAGATGATTTACTCCTGGGTCTTGCCTGTCGGAGCTTTG
TCCTAGATATAATCCAATGTGAAGTCATTTCAGGAAGATCACCTGCTAGG
CATTAGCTTGTCCTATGATGGGTCCTGACAGGTAGTATTGTGATTTTCCC
CCCAGCCCTAAGCCAAATCTTGTGCATTGCCCCTGTCTTGCCCCCCATTT
TAAACACAAGAAGATTGGTTCTTTGGCAGTGATCAGATCCACTGGCATCC
ATTACAGGATTCCCAGAAGTAGAGTTTACTCTGAAAGAGCAACTGAACAC
CTACCCTGTGCTGGTCACTGCTCCAGGATGTAGCACTGACTGATTTAAAC
CCCCGATAATTTATGTTGTATAAAGAATGTCTATTAAGGTCTATAGTCGC
GCGTAGATAGCAAAAACTGTAGTGTTACTCCTCTTCCGTCTTTTTTTTTT
CTCCAACTTTTCGTCTTTTTTCTATTATTTATTTCTATCTTTTCCACCTC
CTTATATTTTTTTTTTTCTACTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCGATAAAGTGTGTATCTCCCTC
TTGGAGTCTCAAAGAGGAAAGTGGTTAAGCAAGAATTCATATAGTTTTAA
AACTATCGTAAAAGGGGAAATGCAGGACCATCTGAAGTAACAGCTTTCAT
GGGGACATTAAATCAGGCCATCCAGGGGCTGAGACTGAACATGGAAGGAT
GAGGTGAGGAAAGGGAGATAGGGAGGTGTAAAACTGCCCTATCACTCTTT
CTCCACCGATAACCTCACTCTTTTGTCCAACGTAGTTGTAAAACCTAGCA
CACACCACTTTTTTTTTTTTCCCCCCCCCCCCTCCCCAAAGATGAAGTTT
AAGTATATTATATCATATTTCCCCTCCCCCCCCCCACAAACAAAAAAATA
AATCCCCCCCTCGCGGGCGGGCTTTCCCCCTCTTATAATAGTCCGCTCTC
CTGCCCGCTTTCCCCCCCCTTTCTTCGCTCTTTCTTCTTCTACCACCCGT
CCGCGGCCTAACTTTTACCTCAGTATATTTATACGCACCCCCCTTCTTGC
TTCTTTATCTCTTATCCCGATTCGCGCCTCCACCTTGAATATTTTTGTAT
ATCAATATCCCGGTAGATCTTTTCTTTCCTCTCCATGTTTAAGACCTCCT
TTCGTTACCTCCATTATACTCACCCCCCATTCTATTATTTCTCCCTCTCC
CCTGTTATACCCCGGCCCCGTTCCTTCTGCCTTTCTCACTCTTTTTATTT
GTACTCACTTCCCCTCTTTCCTACGTACTATCTCTCGTATACGCACTCGT
ACGATAACCGTCGCCCGATTATCATTGTTTATCGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_i08.g1 MSMg01no160_i08.g1 CHROMAT_FILE:
MSMg01no160_i08.g1 PHD_FILE: MSMg01no160_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:30 2005
         (201 letters)



>mm_chr8_27192344_27192944
          Length = 601

 Score =  381 bits (197), Expect = e-110
 Identities = 200/201 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccgataaagtgtgtatctccctcttggagtctcaaagaggaaagtggttaagcaagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tccgataaagtgtgtatctccctcttggagtctcaaagaggaaagtggttaagcaagaat 342

                                                                       
Query: 61  tcatatagttttaaaactatcgtaaaaggggaaatgcaggaccatctgaagtaacagctt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tcatatagttttaaaactatcataaaaggggaaatgcaggaccatctgaagtaacagctt 282

                                                                       
Query: 121 tcatggggacattaaatcaggccatccaggggctgagactgaacatggaaggatgaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcatggggacattaaatcaggccatccaggggctgagactgaacatggaaggatgaggtg 222

                                
Query: 181 aggaaagggagatagggaggt 201
           |||||||||||||||||||||
Sbjct: 221 aggaaagggagatagggaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)