BAC Information

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BAC

Clone NameMSMg01-160P02
Chromosome8 (Build37)
Map Location 39,488,775 - 39,489,082
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621149, Sgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160P02.T7 (MSMg01no160_p02.b1)MSMg01-160P02.TJ (MSMg01no160_p02.g1)
ACCAG360477AG360478
length742792
length of high quality
(start - end)
315 (46 - 360)---
definitionCHROMAT_FILE: MSMg01no160_p02.b1 PHD_FILE: MSMg01no160_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:02 2005CHROMAT_FILE: MSMg01no160_p02.g1 PHD_FILE: MSMg01no160_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGGTTAAAGGGAAGGAAAGTGGGGATATGGAGATATGATTTAT
GACTTGGGCTTTTTTTCCCCCACATGGTGAACTCTTATAGAAAAACTATT
ACAGACAGATTTAAGTAGATCATGATATAACCTCACCTGGATTCTGAAGC
AATGACTGTATGTGCTGTCTTAATTTTACATTTACAGTGAACCTAGTCAG
AATGGGCTTTTTATGACCAGTAAGAAAAGCTGCAACCCTAAGACACAAGC
TCAATCAATGTGTTGTGAGAAACTACCAGATCTAGTGTGTAATTTAATTT
AAAGTTCTTTATGTGGACTTCCCCTGCTTTGGGGCTTGCCTATTTCATAG
TTAAGAATATTCACATGTTACCTGAAAGGAAAGCAATCCCTGACCCTCTA
GTGTCACATCCCATCATGGGCTAATATGAATCTTACACTTCCTTAATTAT
TCTTCAGTCACACCGTCATTTTACATTTATCTATGTGAGCTGGGCACTGG
TGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTTAATTT
CTGAATTTGAGGCCAGCTTGGTCTACAGAGTGAGTTCCAGGACAGCCAGG
GCTACACAGAGAAACTCTGTCTTGAAAAACTAACTAACTAACTAACTAAC
TAACTAACTAACTAACTAACTAACCAAACAAACAAATATATA
ATGAAGTGGGAGGCCTGGNGGCGCCTGGTCCCGACTTGANGNGAACTANA
GAAGTTGCGCGGAGAACTTTTCNCNNCAGGGNGNAGCNGGAGAANGGNNA
NNNAGTGTTGGCTCAAAAAGAAAGAAGANANAGGNGAGNAAGAANAGGGG
AANNANAGGNAGAAGANAGGAGAGNANNNAANNAGGAAGNNAAGAAAGAG
AGAAGAGAAGAGGGAGGAAAAAAAGGAGGAGGAGAAGGAAATTTTTTATG
GGGGTGAAGAATTGAAGAGGTTTGAATTTAGTGTGTTGTTTAAGGGAGGG
GAAAATTTTTTTTGTTTTAGAGAAAAAGAAGGAGAAAAGAAAAAAAATTT
TTTTTTTTTTCCCCCCCCCCCCCCCCCAGGAAGAAAAAAAAGGGAAAAGG
AAAAAAAAGAGGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAGCGG
GGGGAGAAAAGAAAAGAGAGACAGCGAACAACAGAGACGAGCGGCCGACA
AACGAAACAAAGAGAAACAAAATCAGGAGGGCGGCAGGGACAGTTATAAT
CTTTGATATCCTTACATTATATAATTATAAATAATAACAAACACCATGCT
AACACTAATAACATAGACAACACTAATGGTGAGAGATTTATACATGTACT
GACATATTGAATTTCATTTTGTGGAAAGAAGTAGCAAAATAAATTTTTGT
TTTTTTTTTTGTGTGTACTGGTGGAACCAACATAATAAAGGACTTGAATA
CTAACGGGAATAAAACGGTTGTATAAAAAAGAATACTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_p02.b1 MSMg01no160_p02.b1 CHROMAT_FILE:
MSMg01no160_p02.b1 PHD_FILE: MSMg01no160_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:02 2005
         (315 letters)



>mm_chr8_39488571_39489285
          Length = 715

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactggttaaagggaaggaaagtggggatatggagatatgatttatgacttgggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactggttaaagggaaggaaagtggggatatggagatatgatttatgacttgggc 264

                                                                       
Query: 65  tttttttcccccacatggtgaactcttatagaaaaactattacagacagatttaagtaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttttcccccacatggtgaactcttatagaaaaactattacagacagatttaagtaga 324

                                                                       
Query: 125 tcatgatataacctcacctggattctgaagcaatgactgtatgtgctgtcttaattttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcatgatataacctcacctggattctgaagcaatgactgtatgtgctgtcttaattttac 384

                                                                       
Query: 185 atttacagtgaacctagtcagaatgggctttttatgaccagtaagaaaagctgcaaccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttacagtgaacctagtcagaatgggctttttatgaccagtaagaaaagctgcaaccct 444

                                                                       
Query: 245 aagacacaagctcaatcaatgtgttgtgagaaactaccagatctagtgtgtaatttaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagacacaagctcaatcaatgtgttgtgagaaactaccagatctagtgtgtaatttaatt 504

                   
Query: 305 taaagttc 312
           ||||||||
Sbjct: 505 taaagttc 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)