BAC Information

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BAC

Clone NameMSMg01-162B18
Chromosome8 (Build37)
Map Location 66,187,861 - 66,188,056
singlet/doubletsinglet
Overlap genenone
Upstream geneSpock3
Downstream geneLOC384831, EG244495, Tll1, LOC100040989, Cpe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162B18.T7 (MSMg01no162_b18.b1)MSMg01-162B18.TJ (MSMg01no162_b18.g1)
ACCAG361334AG361335
length726727
length of high quality
(start - end)
---196 (117 - 312)
definitionCHROMAT_FILE: MSMg01no162_b18.b1 PHD_FILE: MSMg01no162_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:24 2005CHROMAT_FILE: MSMg01no162_b18.g1 PHD_FILE: MSMg01no162_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAAGCGAGGTATCTCAAATAGACTAGAAGAACTTAGAGAAATTTTCAA
TATTCCTAGTCGTCGGAAAAATGGAAATCAAAAGGACACTGAAATTCCAC
CTCACACCAGTCAGAATGCCTATGATGAATAACTCAGGTGACAGCAGATG
CTGGCTAGGATCTGACTCCTCCATTGCTGGAGGGATTGGACGCTGGTACA
AACTCTGGAAATCAGTCTGGCAGTTCCTTACAATATTGGAAACAGTTCTA
CCAGAGCATCCAGCAATACCTTTCCTGGGGATATACCCAAAAGTTGCTGC
AACATATATTAGTATTTATGCCAANACAGGCCCATAACTGTGGTATTTAT
AATAGCCAGAAGCTGCCAACAACTAAGAAAAACCTCAATGGAGGAATGGA
TACTAAATTGTACTATATCTATACAAGGGAGTATTACTCAACTATCAAAA
ACGATGACTTCGTGAAAATGTTTAACTCTTTTCTTATTGTATATTTTACT
TTGTTTACATTTCAAATGCTTTTCTCTTTCCAAGTCTTCCCTTGAGAACT
TACCTATTCCATAGACCCGTCCACTGTCGAGTGCTCCCTTAACAAACCAC
CCTTTGCTGTACCCCCACTTTGGTATTTCTTTACTTCCGGGAAATCCGAC
TCCCTAAAGTTCTATGACCGCTCCTC
GAAATTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAAGATCTTGGCTGTAAAGAAGAAGAA
AGAAATCAGAAAGATCAATAAAGCAGATAAATTGTATCACTGACCCCACA
CATGGAAACAGGTCTGATATTAGTTGAGCCAATGAAATTGTTACCATCAG
AATCTCAGCTATTCATAGCCAATAAATATTAATGGCCGAACAATCCTTAA
GAAATATCATGCCAACATGTGACGTCACCTGAGTTTTTGATCTTAGGCAC
TCTGATTGGTGTAAGGTGGAATCTCAGAGTCATTTCTCTGGTCACTAAGG
ACTTTGAGCTTTTTTTATATTCCCCTGTCGTGCCCTCTTGGTTTAGTTCT
ATACCCCATTTTTTAAATTCGGATACTAGATATTATTTTGTGGTTAGCTT
CTTGAGTTCTTTACATATTTTGGATATTAGCCCTCTATCAGATGTGAAGA
TTTTTTTCCCAATATGCTAATTTGTCTTATCAACTGTGTTCTTTACCTTA
CAGAAGCTTTCCAGCTTCATGAGGACCCATTTATCAATTCCTGATGTTAT
AGCATGAGTCATTGGAATTCTGTTTAGTTAATTTCCCCTGTGCTAATGAG
TTCAAAGTCCTTTCTCACTTTCTCTTCTATTAGATTCAGTGTATCTGGGC
TTAAAATTGAGGTCCTTGAACTACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_b18.g1 MSMg01no162_b18.g1 CHROMAT_FILE:
MSMg01no162_b18.g1 PHD_FILE: MSMg01no162_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:24 2005
         (196 letters)



>mm_chr8_66187713_66188308
          Length = 596

 Score =  333 bits (172), Expect = 5e-96
 Identities = 190/196 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaagcagataaattgtatcactgaccccacacatggaaacaggtctgatattagttg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 344 aataaagcagataaattgtatcactgaccccacacatgggaacaggtctgatattagttg 285

                                                                       
Query: 61  agccaatgaaattgttaccatcagaatctcagctattcatagccaataaatattaatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 284 agccaatgaaattgttaccatcagaatctcagctattcatagccaatgaatattaatggc 225

                                                                       
Query: 121 cgaacaatccttaagaaatatcatgccaacatgtgacgtcacctgagtttttgatcttag 180
            | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 224 tgtagaatccttaagaaatatcatgccaacatgtgtcgtcacctgagtttttgatcttag 165

                           
Query: 181 gcactctgattggtgt 196
           ||||||||||||||||
Sbjct: 164 gcactctgattggtgt 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)