BAC Information

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BAC

Clone NameMSMg01-162E07
Chromosome8 (Build37)
Map Location 7,025,270 - 7,025,881
singlet/doubletsinglet
Overlap geneEG546032
Upstream geneEG665127
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162E07.T7 (MSMg01no162_e07.b1)MSMg01-162E07.TJ (MSMg01no162_e07.g1)
ACCAG361447AG361448
length700708
length of high quality
(start - end)
309 (45 - 353)612 (73 - 684)
definitionCHROMAT_FILE: MSMg01no162_e07.b1 PHD_FILE: MSMg01no162_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:35 2005CHROMAT_FILE: MSMg01no162_e07.g1 PHD_FILE: MSMg01no162_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTTAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCTCTT
TCTCTTCTATAAGTCTCCCCCGCCCCTCGCTTTTAAGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAATACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTTGATCATTAACACTAGAGA
TTTTCAGATGGCAAAAGGCAAATGTAAGAATCTTACTAACAGAAACCAAT
AACACTGGGCATCATTCAGAACCCAGTACGCCCACCACAATGAGTCCTGG
ATACCCCAGCACACCCTAAAAGCAAGACGCAGATTTAAAATCATATCTCA

TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTACACAGGCTTGCTGGCTACAAAGTA
CTACAGAGAAAGATCTGTCTCGAAGCCTCCTTTGGAGCTGCTGTTTTAAA
CAACTTTCATCCTCTACTGATTTGTTCCATTCCACTGAATGTACATGATG
CACCTGGTCCAAGAAACTGCATTTCAGTTAAAGTCCCTAATTCCAAATTT
TAGGCCTGGAGAAGATCAGGATATCTTCTTCCTTACTCAAGCCAAAGACT
AAAATCTATCTTAGACCATATTAGTATATATACATGTATATATGCTATAA
ATTTCTGCTAAAACATTTTACAAAAATGTTCCATTTGAAATAATAAATTT
AATATTTTTGAGTGCTCTGTTCTATTTCAAGTGTTTATCAAAAGCATCTC
TTTCTTTCCATTTTTCTTTTTCATAAGAAGTTCAGAGAATTCAAAACTTG
AGGAATATATTTTGTACCTTGGCAGAATTTTATTAAATTATTCTAAACAG
ATGGGTGACTATTTTTAAAAGCTCTGGGGAAGGAAGATTCACACCATGTC
TAGGTAGTCCTTCTTGTTTTCATTCTCACAAATCCTGTGAGCTTTCAATT
GCTTCCCATAGCTATGCAGACATCTTGTTTACTAGAGAAAGCAATGATAT
GCACTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_e07.g1 MSMg01no162_e07.g1 CHROMAT_FILE:
MSMg01no162_e07.g1 PHD_FILE: MSMg01no162_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:35 2005
         (612 letters)



>mm_chr8_7024897_7025908
          Length = 1012

 Score = 1168 bits (604), Expect = 0.0
 Identities = 610/612 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacacaggcttgctggctacaaagtactacagagaaagatctgtctcgaagcctcctt 60
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 985 attacacaggcttgctggctacaaagtactacagagaaagatctgtattgaagcctcctt 926

                                                                       
Query: 61  tggagctgctgttttaaacaactttcatcctctactgatttgttccattccactgaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tggagctgctgttttaaacaactttcatcctctactgatttgttccattccactgaatgt 866

                                                                       
Query: 121 acatgatgcacctggtccaagaaactgcatttcagttaaagtccctaattccaaatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 acatgatgcacctggtccaagaaactgcatttcagttaaagtccctaattccaaatttta 806

                                                                       
Query: 181 ggcctggagaagatcaggatatcttcttccttactcaagccaaagactaaaatctatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggcctggagaagatcaggatatcttcttccttactcaagccaaagactaaaatctatctt 746

                                                                       
Query: 241 agaccatattagtatatatacatgtatatatgctataaatttctgctaaaacattttaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agaccatattagtatatatacatgtatatatgctataaatttctgctaaaacattttaca 686

                                                                       
Query: 301 aaaatgttccatttgaaataataaatttaatatttttgagtgctctgttctatttcaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaatgttccatttgaaataataaatttaatatttttgagtgctctgttctatttcaagt 626

                                                                       
Query: 361 gtttatcaaaagcatctctttctttccatttttctttttcataagaagttcagagaattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtttatcaaaagcatctctttctttccatttttctttttcataagaagttcagagaattc 566

                                                                       
Query: 421 aaaacttgaggaatatattttgtaccttggcagaattttattaaattattctaaacagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaacttgaggaatatattttgtaccttggcagaattttattaaattattctaaacagat 506

                                                                       
Query: 481 gggtgactatttttaaaagctctggggaaggaagattcacaccatgtctaggtagtcctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggtgactatttttaaaagctctggggaaggaagattcacaccatgtctaggtagtcctt 446

                                                                       
Query: 541 cttgttttcattctcacaaatcctgtgagctttcaattgcttcccatagctatgcagaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttgttttcattctcacaaatcctgtgagctttcaattgcttcccatagctatgcagaca 386

                       
Query: 601 tcttgtttacta 612
           ||||||||||||
Sbjct: 385 tcttgtttacta 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)