Query= MSMg01no162_e09.b1 MSMg01no162_e09.b1 CHROMAT_FILE:
MSMg01no162_e09.b1 PHD_FILE: MSMg01no162_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:36 2005
(301 letters)
>mm_chr8_16592819_16593519
Length = 701
Score = 563 bits (291), Expect = e-165
Identities = 294/295 (99%)
Strand = Plus / Minus
Query: 5 gaattctcttagtagtgcatgactggagtcacacttgttggcccatttggttggcaggta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaattctcttagtagtgcatgactggagtcacacttgttggcccatttggttggcaggta 440
Query: 65 ggtagcattttacagttctgaaagtcagttccctcttgcctcatggcatgaacccatttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggtagcattttacagttctgaaagtcagttccctcttgcctcatggcatgaacccatttg 380
Query: 125 caccacggtattcatttattcatctgcctatgtattttgaggactccaagacagtctagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caccacggtattcatttattcatctgcctatgtattttgaggactccaagacagtctagt 320
Query: 185 gtcctgaccaaatgtttgctgtattctataaagaatggtagcccaggtgatgtctgtgac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtcctgaccaaatgtttgctgtattctataaagaatggtagcccaggtgatgtctgtgac 260
Query: 245 agtacctacatgcctaatcctcctatttagcataaccaccagctcctcttcataa 299
||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259 agtacctacatgcctaatcctcctaattagcataaccaccagctcctcttcataa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no162_e09.g1 MSMg01no162_e09.g1 CHROMAT_FILE:
MSMg01no162_e09.g1 PHD_FILE: MSMg01no162_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:36 2005
(281 letters)
>mm_chr8_16476852_16477527
Length = 676
Score = 478 bits (247), Expect = e-139
Identities = 269/279 (96%), Gaps = 7/279 (2%)
Strand = Plus / Plus
Query: 1 attcataagaccatggacgttgcagagagcaaagtgaaagatctgcaccaatggatcaat 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 attcataagaccatggacgttgcagagagcaaagtgaaagatctggaccaatggatcaat 260
Query: 61 gtgggatagacagagggaagtctaagaaagcaatggcagcggtggaaagtgagctcatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggatagacagagggaagtctaagaaagcaatggcagcggtggaaagtgagctcatct 320
Query: 121 ggagcccttgggatagtcaggggtcatctgagtgttagtgctctgatgcacacactgagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagcccttgggatagtcaggggtcatctgagtgttagtgctctgatgcacacactgagt 380
Query: 181 ggtctcatgactactcagtgtgagtgttgccatttcagtattaggtgacctcttctttac 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtctcataactactcagtgtgagtgttgccatttcagtattaggtgacctcttcttta- 439
Query: 241 tttatgggatccaggtatgaggtttgc-ctccatccctc 278
|||||| |||||||||||||||| | |||||||||
Sbjct: 440 ----tgggattcaggtatgaggtttgcac-ccatccctc 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 676
Length adjustment: 9
Effective length of query: 272
Effective length of database: 667
Effective search space: 181424
Effective search space used: 181424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
