BAC Information

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BAC

Clone NameMSMg01-162F14
Chromosome8 (Build37)
Map Location 72,440,347 - 72,440,656
singlet/doubletsinglet
Overlap geneGatad2a
Upstream geneLOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6
Downstream geneLOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162F14.T7 (MSMg01no162_f14.b1)MSMg01-162F14.TJ (MSMg01no162_f14.g1)
ACCAG361504AG361505
length718704
length of high quality
(start - end)		313 (49 - 361)285 (79 - 363)
definitionCHROMAT_FILE: MSMg01no162_f14.b1 PHD_FILE: MSMg01no162_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:42 2005CHROMAT_FILE: MSMg01no162_f14.g1 PHD_FILE: MSMg01no162_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAAGAGGAAAGGAATACTCACATAAACCTGGGCATCGGTGTC
TTTGACAGACCTCCTCCACTCGAATACCCGGCAGCATCATCCCACCACCA
CTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGGCCAG
CTCTCAAGTAGTCATGCCACCGCTTGTCAGGGGGGCCCAGGTGAGTCAGG
TATGTGAGCTGTATGTATGCTGGGGCAGGGCCAAGTGCCCACCCCTTCTG
TGGTCTGCCAGGGTTGGTTTGTCTTATTGGCATTTCTTGTCCCCTATCTC
CTCCCAGCAGATTTTTTTTTCCCCCCCCCCCCCTCTACGGGGCCACCACC
CCTCCTCCTGGACCCCCGCCCCCCACAGAATAGAATGTATATTCAGGGAC
AGAGGATCATCCAGCAGGGACTTATCCGTGTCGCCAATGTCCCCAACACC
AGACTGCTTGCCAACATCCCTCAGGTGAGGCCAGAATCTACGTGGCAGTT
TCACATGGTATCAAGTCCTGCTACTCCCCACATTACCCCCGTCGTGTACT
GGCAATTATCCCGGCGCATACATTTTAATTTCCCCTTTTTCTTTTCCCCC
CCTCATATTACAGTCATCACCATCCCCCAGACAACTTGACGAACACAATA
TATGATCAAAATAAAGAG

NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTGTAACTGAAGGGCACT
GTGACATCTAAAGGCTTTCCCACACTGCTGACATTTATAGGGTCTCTCTC
CTGTGTGAATTCTCTCATGCCTTTGAAGTGAAGTGGAAGAACTCAGAGCT
TTCCCACACTGCTGACATTTATAGGGTCTCTCTCCTGTGTGAATTCTCTC
ATGCCTTTGAAGGGAACTGGAAGAACTCAGAGCTTTCCCACACTGGTTAC
ACGAGTAACATTTTCTTACAGTGTCAGTCCCTCCATGTGTGTAAAGTGAA
CTGTGGTAACCATATTTTTTTCCGACCCCCCCGCCTCACAAACGTTTTGT
CCACTGTGGGGCTGGTGACACACCCCAAATGCACTTGGAAAACCAAGGGA
TTTTAAACATACCTCACATTCACAAGGTCCATTCACAGTGTGCGCTCCCA
TGTGTCCTTGAATACTTGTGAGAGAACTAGAATCGTATGGCTTGTTTCCA
TATCCCTCCTGCTCATCCAGTAAGTATTCAGAATCAGATATGACATGCCT
ATTAAAGGATGAATGAGATGTAAAACCTTCTCACAAACACTATATTCACA
GAGCTTACTTTTAGTAGAAAACCTGATGCTTCTATTGAGGTTCGGCATAG
GATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_f14.b1 MSMg01no162_f14.b1 CHROMAT_FILE:
MSMg01no162_f14.b1 PHD_FILE: MSMg01no162_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:42 2005
         (313 letters)



>mm_chr8_72440144_72440856
          Length = 713

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctaagaggaaaggaatactcacataaacctgggcatcggtgtctttgacagacc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggaattctaagaggaaaggaatactcacataaacctgggcatcggtgtctttgacagacc 454

                                                                       
Query: 64  tcctccactcgaatacccggcagcatcatcccaccaccactggtccgaggtgggcagcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcctccactcgaatacccggcagcatcatcccaccaccactggtccgaggtgggcagcag 394

                                                                       
Query: 124 gtgtctgccaaactgggaccacaggccagctctcaagtagtcatgccaccgcttgtcagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtgtctgccaaactgggaccacaggccagctctcaagtagtcatgccaccgcttgtcagg 334

                                                                       
Query: 184 ggggcccaggtgagtcaggtatgtgagctgtatgtatgctggggcagggccaagtgccca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggggcccaggtgagtcaggtatgtgagctgtatgtatgctggggcagggccaagtgccca 274

                                                                       
Query: 244 ccccttctgtggtctgccagggttggtttgtcttattggcatttcttgtcccctatctcc 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 273 ccccttctgtggtctgccagggttggtttgtcttagtggcatttcttgtcccctatctcc 214

                     
Query: 304 tcccagcaga 313
           ||||||||||
Sbjct: 213 tcccagcaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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