BAC Information

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BAC

Clone NameMSMg01-163C02
Chromosome8 (Build37)
Map Location 38,978,789 - 38,979,095
singlet/doubletsinglet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163C02.T7 (MSMg01no163_c02.b1)MSMg01-163C02.TJ (MSMg01no163_c02.g1)
ACCAG362035AG362036
length727705
length of high quality
(start - end)
310 (51 - 360)286 (81 - 366)
definitionCHROMAT_FILE: MSMg01no163_c02.b1 PHD_FILE: MSMg01no163_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:39 2005CHROMAT_FILE: MSMg01no163_c02.g1 PHD_FILE: MSMg01no163_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGCTTTAACTTTTTAGTTAGCAGGGGACGAATGCATTTCC
TTCTGAATACATTGCTTTTATTCTCCGCTCTCCGCCTTTCCCATTCTTCA
TTCCTTGTCTTGCTAATCTCCTTCTTTCTCACAAACAGTTCTCTTTCTCA
ATTTACAGATGATTTTATTTGTACACATATGTATTTTAAATATAGACTCT
GCATATGTACTGCATGAAAACATGGAGTATTTCTCGTTCTTCTTTAGACC
TCTCTTCCTTAGTGCTTTCTTTTCTACTCTCAGGTCAAAGTGGTGCATCT
GTCTTCTCTCCAATTAATGCCCCCGACACCTTGTCACATGTACATGGCTC
AAATGTATGGGTTTATATTGAGACATCTCTTCTTCACTGTTAGAGTACAT
GCTTTTGCCCAGCCCCCCTCCAGAGGACATGCTGTTGTCATCATGACTCT
GTAATGTAATGAGGGATTAAGGAATTGTGGTTGGGTCTAACAATACTCTT
TGAGCCTAAAAACCGTCCGGACCCCTTGGGGGAATTTTATTGTTTAAACA
AATTGTTTTAAAAAACATTTTAATTTTCCAAAGGCTTGTGATAAACCCCC
TGGAGAGTCACCTTTGGAACGGGTAAAATCCACTTCCTTGGGCAAAATTT
AACTGGGGCGTCACAAAAAAAATTGTT
NTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATTTGATTCAAATAATT
TTTGGAAGAGAGTTTAAGGAGACAGTTTTAGTTGTTTTGACAGAAAGATG
TAATAATGTTAGAATCAAGAAAAGAATGTGAGCTTCCTCATAGAATATTA
AGTAAAGATTACATGACAAGAAGTACAATGCGCTTTCATAAATTGCAATA
AGAAGAGAAACAAGCTTGGGACTAATTTGTGATCAAGAGAATATTTTCCT
TCTAAGTCGGGTTTAGGAAAAGGGCACAGGTGGGCACTAAGGTAAAGCAA
GGGCATGCAAAACTGTTGTTTTGACCCTCCCCCGAGCTTATAGAATAAAA
CACTGATTTGACCTCACTATTGACATCCATCTGTAACTCTCCTTTCTGTT
TAACATTTTATCTATAAGGTAATTTTATGAAGACATTTTGTGTAAGAATA
TATAAAAAGGCTGAGAGAAGAAATAAAGTATGGCTACTGGGGCTCTGATA
CATCCACCAAATGTATATGTGTAGTATATGTCTGTTGGAATATATGTATG
TGCATACATATGTAGGCAGGTATATGAGTATGTATATGAGTATGCATATG
CACTTGTGGAATTAATGAAACAGATGGGTAGTCCTGACTAAAGTTTGTCA
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_c02.b1 MSMg01no163_c02.b1 CHROMAT_FILE:
MSMg01no163_c02.b1 PHD_FILE: MSMg01no163_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:39 2005
         (310 letters)



>mm_chr8_38978586_38979295
          Length = 710

 Score =  594 bits (307), Expect = e-174
 Identities = 307/307 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgctttaactttttagttagcaggggacgaatgcatttccttctgaatacatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggaattctgctttaactttttagttagcaggggacgaatgcatttccttctgaatacatt 451

                                                                       
Query: 64  gcttttattctccgctctccgcctttcccattcttcattccttgtcttgctaatctcctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gcttttattctccgctctccgcctttcccattcttcattccttgtcttgctaatctcctt 391

                                                                       
Query: 124 ctttctcacaaacagttctctttctcaatttacagatgattttatttgtacacatatgta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctttctcacaaacagttctctttctcaatttacagatgattttatttgtacacatatgta 331

                                                                       
Query: 184 ttttaaatatagactctgcatatgtactgcatgaaaacatggagtatttctcgttcttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttttaaatatagactctgcatatgtactgcatgaaaacatggagtatttctcgttcttct 271

                                                                       
Query: 244 ttagacctctcttccttagtgctttcttttctactctcaggtcaaagtggtgcatctgtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttagacctctcttccttagtgctttcttttctactctcaggtcaaagtggtgcatctgtc 211

                  
Query: 304 ttctctc 310
           |||||||
Sbjct: 210 ttctctc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)