BAC Information

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BAC

Clone NameMSMg01-163D04
Chromosome8 (Build37)
Map Location 54,564,305 - 54,564,589
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163D04.T7 (MSMg01no163_d04.b1)MSMg01-163D04.TJ (MSMg01no163_d04.g1)
ACCAG362083AG362084
length735740
length of high quality
(start - end)
636 (47 - 682)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no163_d04.b1 PHD_FILE: MSMg01no163_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:45 2005CHROMAT_FILE: MSMg01no163_d04.g1 PHD_FILE: MSMg01no163_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTACCTTTGAGCCCCAATTTTAATGAGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGCTCTTATATTTATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATACTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTGTTGACGGTGTCTTTTGCTTTGCAGAAGCTTGCAACTTTATGA
GGTCCCATTTATCAACTTGGTCCCATTTATCGATTCTTGATTTTACAGCA
CAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCGTT
GAGGCACATCTCTACTTTCTCCTCTATAAGTTTCAGTGTTTTATGTGGAG
TTCCTTGATCCACTTACATTTGACCTTAGTACAAGGAGATAGGAATGGAT
CAATTCTCATTCTTCTACTTGATACCTGCCAGATGTGCCGGTACCATTTG
TTGAAAATTATGTCTTTTTCCCAGTGGATGGTTTTAGCTCCCTGTCAAAG
ATCAAGTGACCATAGGTGTGTGGTTTCATCTCTGGGTCTACAATTCTATT
CCATTGGTCTACTTGTCTGTCGCTATACCAGTACCATGAAGTTTTTATCA
CAATTCCTCTGTAGTACAGATTAGGTCAGGCATGGTGATTCCACCAGAGG
TTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTA
ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACATTCTTGCAAGGTGCGTTCTAGC
TGCAACATTCTTCTGTCCTGTGTTTCAAAAAAATGTGCTCAGTTGTTGTG
CATTCCAATGACAATGGCAAAGACCTCTTGGTCTCCAGGCATTCAAACTG
TGAGTCCCACTATCCTTACCTCAGTTCGACAGCAAGCAACAAAACTCTGC
CTCTGAATTTCTTCTGATGATCAGAGAAAGTAGAGAAAAAGATTCAGAAG
AGACTTATTAGTTAAATTAATTTTTAAAATTATATTGAGTAAATATTTGC
TTAAAGAAGGTATCATTTCAGGCCCCTCATTAGACTGTCTAGCTTAGCTG
CTTATTTTAATGTTTTCACTTGATTTCTGAGCCCCTTATATTTATTACTG
GTTTTGAACTGTAATATCCCTCTCCCCCTTGTCATTGACTTCTTGTACTC
TGTTTGTGTATCTGCCCATATCTTTCCATCTAGAAACAGAAAGCAAAATT
AAAAATTTTCTTTGGCCTTATCTCCAGAAGATTTTTAATTCATCAACATG
GCTGCTCTGGCAGGGGTCACATCTAAAGTCTTTCTAGGTCTATATGATCC
AGCTAGACTGACGTACCTTTAATCCTTCTACTGGGAATACAGACACACCC
TTATTACACACCTTCAATCTCAAACAATGAAGGAAAGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_d04.g1 MSMg01no163_d04.g1 CHROMAT_FILE:
MSMg01no163_d04.g1 PHD_FILE: MSMg01no163_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:45 2005
         (285 letters)



>mm_chr8_54564153_54564837
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacattcttgcaaggtgcgttctagctgcaacattcttctgtcctgtgtttcaaaaaaat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 437 aacattcttgcaaggtgcgttctagctgcaacattcttccgtcctgtgtttcagaaaaat 378

                                                                       
Query: 61  gtgctcagttgttgtgcattccaatgacaatggcaaagacctcttggtctccaggcattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgctcagttgttgtgcattccaatgacaatggcaaagacctcttggtctccaggcattc 318

                                                                       
Query: 121 aaactgtgagtcccactatccttacctcagttcgacagcaagcaacaaaactctgcctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaactgtgagtcccactatccttacctcagttcgacagcaagcaacaaaactctgcctct 258

                                                                       
Query: 181 gaatttcttctgatgatcagagaaagtagagaaaaagattcagaagagacttattagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gaatttcttctgatgatcagagaaagtagagaaaaagattcagaagagacttattagtta 198

                                                        
Query: 241 aattaatttttaaaattatattgagtaaatatttgcttaaagaag 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aattaatttttaaaattatattgagtaaatatttgcttaaagaag 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)