BAC Information

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BAC

Clone NameMSMg01-163D16
Chromosome8 (Build37)
Map Location 43,285,345 - 43,285,678
singlet/doubletsinglet
Overlap genenone
Upstream geneFgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353
Downstream geneEG620772, LOC628212, Triml1, LOC622082, EG622117, LOC100039417
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163D16.T7 (MSMg01no163_d16.b1)MSMg01-163D16.TJ (MSMg01no163_d16.g1)
ACCAG362107AG362108
length720722
length of high quality
(start - end)
334 (384 - 717)281 (82 - 362)
definitionCHROMAT_FILE: MSMg01no163_d16.b1 PHD_FILE: MSMg01no163_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:47 2005CHROMAT_FILE: MSMg01no163_d16.g1 PHD_FILE: MSMg01no163_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAGCTCTCGCCTGTGCCATGCTTGCATGGATACTGTCAT
GCTCCCACCTTGATGATAATGGACTCAACCTCTGAGCCTGTAAGCCAGGC
CCAATTAAATGTTGTTTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGT
TCACAGCAGTAGAACCCTAACTAAGACAATGCTCAATAACTCAACAGCAG
AAAGAAACCTCAACAGTCCAGTAGGAGAACTAATATTCACTGAGATGGTC
CTCGAAATCCATGTGAGAGATAAACAATGTCCTCCCAAAATCCTTTCCAA
GCTCTATCAGCATGTTTCTCACCCCCCCCCACAGCAATGGCAATTAAGCC
CATAACACGGTATTGAAGGCCTTAAGCAATCACCCTCCTAGGAAAACTTT
GACACTACATATATCCAATGGATATTTAAGTCTATGTATTATCTAGTAAA
ATATTTGACCTTATTCTCTTTCTGTATTCTATTCAATAATAAGCTGAATA
AAATCTGTAGCAATTCATTTTGACAACAAATGGGCACTTATTTCTCAAAT
GTACATTTCTCAACACTAAAAATTCTGAGTTCTACCTACTTCACATATGT
ATTGCCACAACTATCACCCTTTACTCTGTATAAGCAGGCTCACTACAGAA
AGAAGTTTTAATTTGCTGTC
NNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCA
CATTTTTGATAGGGTTATTTAGTTCCTTGGAGTCTAACTTCTTCATTTCG
TTGTATATATTGGATATTAGCCATCTATCAAATGTTGAATTGGTAAAGAT
CTTTTCCCAATCTGTTGGTTGCCTTTTTGTCTTAATGACAGTAACCTTTG
CCTTACAGAAGCTTTACAATATTATGAGGTCTCATTTGTTGATTCTTGAT
CTTAGTGCACAAGCCATTGGTGTTCTGTTTAGGAATTTTTCCCCTGTGCC
CATATGTTTGAGGTTCTTTCCCACTCCCCCCTCTGTAAGTTTCAGTGTAT
CTGGTTTTATGTGGAGGCCCTCGATACACTTAAACTTGAGCTTTGTACAA
GGAGATAAAAATGGATCAATTTGCATTCTTCTACATGCTAACCACCAATT
GAGCCAGCACCAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAA
AATATGGTACATTTACACAATGGAGTACTACTCAGCTTAAAAACAATAAA
TGTATGGAATTCTTATGAAATGAATGGAACTAGAAAATATCATCCTGAGT
GAGGTAACCTAATCACAAAGAACATGCATGGTATGCACTTACTGATAAGT
GAATATTAGCCCAAAAGCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_d16.b1 MSMg01no163_d16.b1 CHROMAT_FILE:
MSMg01no163_d16.b1 PHD_FILE: MSMg01no163_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:47 2005
         (334 letters)



>mm_chr8_43285145_43285878
          Length = 734

 Score =  630 bits (326), Expect = 0.0
 Identities = 332/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaatggcaattaagcccataacacggtattgaaggccttaagcaatcaccctcctagga 60
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 534 gcaatggcaattaagcccataacacggtattgaaggttttaagcaatcaccctcctagga 475

                                                                       
Query: 61  aaactttgacactacatatatccaatggatatttaagtctatgtattatctagtaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaactttgacactacatatatccaatggatatttaagtctatgtattatctagtaaaata 415

                                                                       
Query: 121 tttgaccttattctctttctgtattctattcaataataagctgaataaaatctgtagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tttgaccttattctctttctgtattctattcaataataagctgaataaaatctgtagcaa 355

                                                                       
Query: 181 ttcattttgacaacaaatgggcacttatttctcaaatgtacatttctcaacactaaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttcattttgacaacaaatgggcacttatttctcaaatgtacatttctcaacactaaaaat 295

                                                                       
Query: 241 tctgagttctacctacttcacatatgtattgccacaactatcaccctttactctgtataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tctgagttctacctacttcacatatgtattgccacaactatcaccctttactctgtataa 235

                                             
Query: 301 gcaggctcactacagaaagaagttttaatttgct 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 gcaggctcactacagaaagaagttttaatttgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)