BAC Information

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BAC

Clone NameMSMg01-163H14
Chromosome8 (Build37)
Map Location 16,882,506 - 16,882,804
singlet/doubletsinglet
Overlap geneCsmd1
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163H14.T7 (MSMg01no163_h14.b1)MSMg01-163H14.TJ (MSMg01no163_h14.g1)
ACCAG362264AG362265
length741746
length of high quality
(start - end)
311 (47 - 357)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no163_h14.b1 PHD_FILE: MSMg01no163_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:04 2005CHROMAT_FILE: MSMg01no163_h14.g1 PHD_FILE: MSMg01no163_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACACGAGGTTGGAATTAGGAGATCTCTGATTTTAGATGTTAGGA
TGCTAAAAACCTATCCTTACACTTCAATGTTTAATTTGGAAGCACATAAT
TATAATTAGAGTTGTCTGCATATAATAAAAGGAGGTAGCAAGTATGTTTG
AAATTTGCTAATAATTAAGCAAAATCATGGCTATATTTTGAGCTGTGCAT
ATCTACAATGTGCAGTTCTTACAGACTTCAAAGATGTAGTATTTAGGGCT
GAAGAGATACCCCTGTGTTTAAGAGCACTGGATGTTCTAGTAGAAGATGT
TATGACTTTTGTACTCCCCCCCCCCCGCCACTCCTGTTCCAAGGGATCTG
ATCTATTTTGACCCCCGCAAGAACAGCACATATGGGTTACACACACATAT
ACATGCATGTAAACACTCATATACATAAGATAAAAGATAAGAGTACAACA
ACCACAAAAACTCCATATACTCCAACACTAAAATTTGCTGTAGTGTTCTG
CATGATCCTCAGAGTCAGGTGGGAGGAAAAGCAAAGACAGACCCATAACA
GAGACCAAGAACAGGCATATGGATTCGCATTTCAATATTTAAGTTAAAGG
GACATTATGCTAGCCAGAAAGTTTTCATATTTATCTATGGCCATGATTAT
TGATATTTTGTTACATTTGGAGAACTTCCATAACTTACATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCCCGGGTCAAACAGTGTGCCA
AGCCCTTAAGGACTTGCTGAAAGTGAAAGGAATTGGGCTGAAAAAAGGAG
ACCCTGGAGAACTTTTTAAAAGCAGTGGATCAGGTCGCTCCTTGGTTTCC
CATATCAGGACATCTTACAGGGCCCAGTTGGGAGAAGTTAGGGAAGGACT
TGAAGTTTGCAGAACAGGGAGTTCTCACTAAAGGGGTGCTGCCAGTGTGG
AAGCTAATACGGAATTGTATTGAGGATAAGGAAAGATGTGGAGCGGAACT
CCAAAAGGTCTATGAGGCACCCCCTCCCGTGAAAGAGGATCGATCCCAAA
AGTCAGAGACTTACCCACGCTCTAGTGATGGAGATATATCTGAGGATGAT
CTGGAGAGCATAGCCAACTGTCTAGAGAAAGTGAAAATGAAGGTAGAACC
TTCGGACCAGGGCCGATGTGGCCGCCTCTGTATGCCCCTGATGGAGCATC
AAGTCGTAGTCTGCATCCAGAAACCTGGAGGTAACTTCGAACCCAGTGCT
TTCCTGTATTTCAGGATGCACTGGTGAGGCCATTAACGCTTATACCTCCA
TTGCCAGAAAGTCCATTTTGATCCGGTGAATCCTCATCATTTAGTCTGCT
GGTTTATCTTCCTCTCCATAAAAGTCTCCATATGTTCGTCGCACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_h14.b1 MSMg01no163_h14.b1 CHROMAT_FILE:
MSMg01no163_h14.b1 PHD_FILE: MSMg01no163_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:04 2005
         (311 letters)



>mm_chr8_16882356_16883066
          Length = 711

 Score =  563 bits (291), Expect = e-165
 Identities = 297/299 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacgaggttggaattaggagatctctgattttagatgttaggatgctaaaaac 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaattcacacgaggttggagttaggagatctctgattttagatgttaggatgctaaaaac 390

                                                                       
Query: 65  ctatccttacacttcaatgtttaatttggaagcacataattataattagagttgtctgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctatccttacacttcaatgtttaatttggaagcacataattataattagagttgtctgca 330

                                                                       
Query: 125 tataataaaaggaggtagcaagtatgtttgaaatttgctaataattaagcaaaatcatgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tataataaaaggaggtagcaagtatgtttgaaatttgctaataattaagcaaaatcatgg 270

                                                                       
Query: 185 ctatattttgagctgtgcatatctacaatgtgcagttcttacagacttcaaagatgtagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctatattttgagctgtgcatatctacaatgtgcagttcttacagacttcaaagatgtagt 210

                                                                      
Query: 245 atttagggctgaagagatacccctgtgtttaagagcactggatgttctagtagaagatg 303
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 209 atttagggctgaagagatacccctgtgcttaagagcactggatgttctagtagaagatg 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)