BAC Information

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BAC

Clone NameMSMg01-163I04
Chromosome8 (Build37)
Map Location 7,271,746 - 7,272,028
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163I04.T7 (MSMg01no163_i04.b1)MSMg01-163I04.TJ (MSMg01no163_i04.g1)
ACCAG362290AG362291
length710719
length of high quality
(start - end)
312 (49 - 360)283 (80 - 362)
definitionCHROMAT_FILE: MSMg01no163_i04.b1 PHD_FILE: MSMg01no163_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:07 2005CHROMAT_FILE: MSMg01no163_i04.g1 PHD_FILE: MSMg01no163_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGTTCTGTACCACATTTTTAATAGGGTTACTTGGC
TCTCTGGAGTCTAACTTCTTGAGCTCTTCGTATATATTGGATATTAACCC
TCTATGGGATGTAGTGTTGGTAAGATTTTTTCCCAATCTGTTGTTTGCCA
TTTTGTCCTATTGACAGTATCTTTTGCCTTACAGAAGCTTTGTGATTTTA
TGAGGTCCCATTTGTCAGTTCTTGGTCTTAGAGCATAAGTTATTGGTGTT
GTGTTTAGGAAAATTTCCCCCGTGTCCATGTGCTCGAAGCTCTTCCCCAT
CTTTTTTTCTATTTTTTTCCGNGCCTNTGCCCTTATGTGGAGGTCCTTGA
TTCACTTGGACTTGCACCACACTTGGAAAGATGCTTAAATTTCTGCCTTA
ACTTCCCCACAGTGATGGACTGTAACCTGGAACTGTGAGACAAATATATC
AATTCTTCACTAAATTGATTTATTGGATGTGCGGGTAGCCAGGATGTTTT
AGCACAGCCACCCAATGATACTTAAACTCCTTAAAAGGGAATGCTGCATT
GATTCCCCAAAGTATCCCCCATCCCTAATAGATTAAAGGTCAGATACAGC
CTTGTGTTCAAAACTTTTCTTAAATTCTATTCTTTACATTAACAACTCTC
ACTGTAGAAG
ATCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCATTTGGATTCTGCAATGT
GGAAGCCCAGTTCTGAGAAGTTGATGCTGTCATGTTTACCCTGAGCCATG
AAGATAGAGGAACATCACACTCTGGAATGGGCTCTTCTCTATTTCTGGTC
TTTCCATGTTTTCTGATAAATCAAGGTAGGTGCTAGGAGTGAACAAGGCA
AGTTCATAGGCATAAGCAATGGGAAGAAATCCATAATATAGCTATAAACC
CCTTTTAAAAATGATTACTCATATTTAAATATGAAAGAACAATATAATTC
TCAGGATGTATGCTTATTTTACCACCCCCCCCCCGAAAAGAAAATTCTGT
CATGATAATCAAGTAGCACACCCCAATCAAATTAGAAGTAATTAATCTTA
CCTTTCAAATTGGCCATTAAAAATAAATTATAAATTGCATAGGCAGTAGA
CTACTCAATGATCTCTAGGAAAAGAACACTGGTTGACCCAAGTGTATCAA
AAATGGAGGGTTTTTTTTTGTTTTTTGTCTTTTGGTTTTTGGTTTATTGC
TTTTTTTTTTTTTTATTATCTTTACCCTTTTTACTCCCCTTTTTCCCTCC
TTAATTTTCCCATTCTCAAATACTTCACTATATCCACTTTTTACTCCCTC
TTTTCCCCCACCATAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_i04.g1 MSMg01no163_i04.g1 CHROMAT_FILE:
MSMg01no163_i04.g1 PHD_FILE: MSMg01no163_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:07 2005
         (283 letters)



>mm_chr8_7271546_7272228
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatttggattctgcaatgtggaagcccagttctgagaagttgatgctgtcatgtttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctcatttggattctgcaatgtggaagcccagttctgagaagttgatgctgtcatgtttac 424

                                                                       
Query: 61  cctgagccatgaagatagaggaacatcacactctggaatgggctcttctctatttctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctgagccatgaagatagaggaacatcacactctggaatgggctcttctctatttctggt 364

                                                                       
Query: 121 ctttccatgttttctgataaatcaaggtaggtgctaggagtgaacaaggcaagttcatag 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctttcaatgttttctgataaatcaaggtaggtgctaggagtgaacaaggcaagttcatag 304

                                                                       
Query: 181 gcataagcaatgggaagaaatccataatatagctataaaccccttttaaaaatgattact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcataagcaatgggaagaaatccataatatagctataaaccccttttaaaaatgattact 244

                                                      
Query: 241 catatttaaatatgaaagaacaatataattctcaggatgtatg 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 catatttaaatatgaaagaacaatataattctcaggatgtatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)