Query= MSMg01no163_j18.b1 MSMg01no163_j18.b1 CHROMAT_FILE:
MSMg01no163_j18.b1 PHD_FILE: MSMg01no163_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:14 2005
(316 letters)
>mm_chr8_8618936_8619651
Length = 716
Score = 588 bits (304), Expect = e-172
Identities = 307/308 (99%)
Strand = Plus / Minus
Query: 5 gaattctcattaggaaaggcaggtcagattccccaggccccataagtgccccttccccct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattctcattaggaaaggcaggtcagattccccaggccccataagtgccccttccccct 453
Query: 65 ccctgattgagccttacacgttggtttttggtttatggccgtgctgtccgggctccaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccctgattgagccttacacgttggtttttggtttatggccgtgctgtccgggctccaagg 393
Query: 125 cagtacccgggctccatgtcaaagcaaagcacacatggcccacctcttagagtccttgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cagtacccgggctccatgtcaaagcaaagcacacatggcccacctcttagagtccttgag 333
Query: 185 atggaagtaagttatgccgcggaagggaaggcgaagataggacatatttataataggtgt 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 332 atggaagtaagttatgccgcggaaggaaaggcgaagataggacatatttataataggtgt 273
Query: 245 atagaacacaagggatataaaatgaaagatttttactaatatatattttaagattacaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atagaacacaagggatataaaatgaaagatttttactaatatatattttaagattacaca 213
Query: 305 caatacac 312
||||||||
Sbjct: 212 caatacac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_j18.g1 MSMg01no163_j18.g1 CHROMAT_FILE:
MSMg01no163_j18.g1 PHD_FILE: MSMg01no163_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:14 2005
(286 letters)
>mm_chr8_8507220_8507905
Length = 686
Score = 468 bits (242), Expect = e-136
Identities = 272/282 (96%)
Strand = Plus / Plus
Query: 4 agactcggaaacagtgacagatcacccccaagaggtgacacttggcttgtttggaaatgt 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agactgggaaacagtgacagatcacccccaagaggtgacacttggcttgtttggaaatgt 263
Query: 64 ttggggtgcctggacacaatgtcaccgtgtttgatcatcattctgtttcttgttctcagt 123
||||||||| |||||||| | |||||||||||| |||||| ||||||||||||||||||
Sbjct: 264 ttggggtgcatggacacagtatcaccgtgtttggtcatcacactgtttcttgttctcagt 323
Query: 124 aagttttgcatcacaagaaagtccatcattcttctgacatcaaggcaagttgcacaggaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagttttgcatcacaagaaagtccatcattcttctgacatcaaggcaagttgcacaggaa 383
Query: 184 gagaggactcttcgtcatcaacacacagacctcctcttttaacaaagtgcatatgactgg 243
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 gagaggactcttcgtcatcaacacacagacctcctcttttaacaaagcacatatgactgg 443
Query: 244 gtcctgggtaacagggatttcaggcccgcttcctgaaaacca 285
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 gtcctgggtgacagggatttcaggcccgcttcctgaaaacca 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
