BAC Information

Click to search

BAC

Clone NameMSMg01-163M09
Chromosome8 (Build37)8 (Build37)
Map Location 56,192,190 - 56,192,49358,065,874 - 58,066,114
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624
Downstream geneLOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163M09.T7 (MSMg01no163_m09.b1)MSMg01-163M09.TJ (MSMg01no163_m09.g1)
ACCAG362473AG362474
length709709
length of high quality
(start - end)
310 (50 - 359)241 (78 - 318)
definitionCHROMAT_FILE: MSMg01no163_m09.b1 PHD_FILE: MSMg01no163_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:26 2005CHROMAT_FILE: MSMg01no163_m09.g1 PHD_FILE: MSMg01no163_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:26 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(56,192,190 - 56,192,493)(58,065,874 - 58,066,114)
sequence
ATATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTAGGGACTCTCAAAGAGGGCATGTCTAAAGGTGGATACCAT
TATGTCTGAGCTCTTGCCCTAATGACTTATAATATTTGGGATCATCGGCC
CTAATTTGTCCTCCTTTCTTTATTCAGTTAATCTCTCTTTCTCTTTCTCT
CTCTCTCTCTCTCATCTCTCTCACACAACCACTCACCCAATTTAGTTTGG
TTTTTTCTTCATTGTTCTTTTCCCTTTATTTTTACTCCCTTGTAATTTCA
CTTGTTTATTTTTTATTCTTTTTTGGGCATAGAGGACATATCTACACGCC
AAACTTCTTGATATATGCCCACACCCCTTTATGACTCTGTTTCTCTTCGT
TTATATATTATCACCACGCATGTTGGTAGAATTGTCTATCAAATAATTGT
GAGTGTTTGCCACCCCAGGGCTGGGGTCCTAGGATCTATAAGAAGGTAAG
CTGAACAAAGCAAGGGAAGAAATCCAGTAAACTGTACCATTCCAGGGCCT
CTACATCAACTCCTGACTCCAGATTCCTGCCCTGTGTGAGTTCTAGTCCT
GCCTTTCTTTGCAATGAACAGCACTGTGTAAATGTAAGCTGAATTAACCT
TTTCCTCCACAAATTGATTCTTGGACATGATTTTTTGCGCACGGATTAAT
AACCTGATC
AACGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGACCATTTCTGAGCTCAAAC
TAGGGAGACTAAAGGCAACAAATATCAATCTAATAAATAGTTGAAACATA
AAAAGAAATATCACAAAGAGGCCAGATGATACATGTTCTAAAAGCAGAAA
TAAACAGAAAACCATCTCTGATACATATTGAAGACAGTGAAATGTGTTAC
AGGTGTGAATTCATGAAAACAGGGGGATGAAGTTTTGCATGGAATAAATT
TTAACTCGTTTGGACTTGTTTTTTTTTTACCCAGCAATTTTAAGATGTCT
CAATTTTTTGGTGNATTCCAAAACAAANCCCCCTAGGTTTTATTTAAAGT
AGNTATGTGGAGCTTCAAAAGTTNGATTTCAAAATTATGGGGGGTGGGTT
TCAAGCATGTTGATTATTTTATTATGCTCCTGATACTGGAATTTAAGTTT
TGAAAGGCACAGACAAAATAGAAATTCTAACTTCAGACCCTGATGCTTTC
AAAATTAATGCTAGTTATTCTTCCCTGAGTTGTTGGGATTGGCGGTCTTC
AAGAGGATGAGATCAAAATGAGGGCCATAATTTGTTTCCGTGCCTCCCAT
CTTTTGTACATAAACCCAGGCGGCTTTTTCTGATAATAGCGTCTAAATAT
CCTCCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_m09.b1 MSMg01no163_m09.b1 CHROMAT_FILE:
MSMg01no163_m09.b1 PHD_FILE: MSMg01no163_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:26 2005
         (310 letters)



>mm_chr8_56191986_56192695
          Length = 710

 Score =  580 bits (300), Expect = e-170
 Identities = 303/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagggactctcaaagagggcatgtctaaaggtggataccattatgtctgagctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagggactctcaaagagggcatgtctaaaggtggataccattatgtctgagctc 264

                                                                       
Query: 65  ttgccctaatgacttataatatttgggatcatcggccctaatttgtcctcctttctttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgccctaatgacttataatatttgggatcatcggccctaatttgtcctcctttctttat 324

                                                                       
Query: 125 tcagttaatctctctttctctttctctctctctctctctcatctctctcacacaaccact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagttaatctctctttctctttctctctctctctctctcatctctctcacacaaccact 384

                                                                       
Query: 185 cacccaatttagtttggttttttcttcattgttcttttccctttatttttactcccttgt 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacccaatttagtttggtttttttttcattgttcttttccctttatttttactcccttgt 444

                                                                       
Query: 245 aatttcacttgtttattttttattcttttttgggcatagaggacatatctacacgccaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatttcacttgtttattttttattcttttttgggcatagaggacatatctacacgccaaa 504

               
Query: 305 cttc 308
           ||||
Sbjct: 505 cttc 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no163_m09.g1 MSMg01no163_m09.g1 CHROMAT_FILE:
MSMg01no163_m09.g1 PHD_FILE: MSMg01no163_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:26 2005
         (241 letters)



>mm_chr8_58065674_58066314
          Length = 641

 Score =  389 bits (201), Expect = e-113
 Identities = 231/241 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaccatttctgagctcaaactagggagactaaaggcaacaaatatcaatctaataaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 441 ttagaccatttctgagctcaaactagggagactaaagggaacaaatatcaatcaaataaa 382

                                                                       
Query: 61  tagttgaaacataaaaagaaatatcacaaagaggccagatgatacatgttctaaaagcag 120
           |||||||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tagttgaagcatataaagaagtatcacaaagaggccagatgatatatgttctaaaagcag 322

                                                                       
Query: 121 aaataaacagaaaaccatctctgatacatattgaagacagtgaaatgtgttacaggtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aaataaacagaaaaccatctctgatacatattgaagacagtgaaatgtgttacagctgtg 262

                                                                       
Query: 181 aattcatgaaaacagggggatgaagttttgcatggaataaattttaactcgtttggactt 240
           |||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 261 aattcatgaaaacaggtggatgaagttttgcatggaataaatttcaactagtttggactt 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)