BAC Information

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BAC

Clone NameMSMg01-164I17
Chromosome8 (Build37)
Map Location 33,446,139 - 33,446,426
singlet/doubletsinglet
Overlap genenone
Upstream gene7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
Downstream geneEG546052, LOC100042715, LOC628408, EG628412, Wrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164I17.T7 (MSMg01no164_i17.b1)MSMg01-164I17.TJ (MSMg01no164_i17.g1)
ACCAG362989AG362990
length766747
length of high quality
(start - end)
314 (46 - 359)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no164_i17.b1 PHD_FILE: MSMg01no164_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:26 2005CHROMAT_FILE: MSMg01no164_i17.g1 PHD_FILE: MSMg01no164_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAGTTCTTAGGCAAATGGATGGAACTAGAAAATGTCATCCTG
AGTAAGATAACCCAATCAGAAAAGAACATACATAGTATGCACTCACTGAT
AAGTGGATATTAACCCAGAAGTTCAGAATACCCAAGATACAATTCACAGA
CCACATGAAGCTCAAGAAGAAGGAAGACCACAGTGTGGATACTTTGTTCC
TTCTTAGGAGGGGCATCATAATATCTATGGAAGGAACAGGAACAAAGTTA
TGGCAGAAACTGAAGGAAAGACCATCTAGTGACTGCCCCACCTGGGGATC
CATCCCATATTTTTTTATTCCCCCCCCCCCCCACTGTGGATGTCAATAAG
TGCTTACTGTTTGTACCCCGACGCAGATGACTACTGAGAGGTTCTGCCCG
AACCTGAAAATTCTCTATTTGGATGCTCACAGCCATTCATTGGACTGACC
ACAGGGTTCCCTATGTAGTATTCTATATAGGTATCCTTAGAGTTTAACGT
GTGTTTTATTTTATAAGATGATCCACAATTTTGAACCACTCTTATTCTCC
AAATTTTTTTTGTTTTTATTCCATCTTATTTTTACCTATCACATGGTTGT
TTATTAAGATATTATATTACCCCATTTTTTTTCCCCTATTTTCCTTATAT
ATAATACATTTATATCATTATCACCTCCACTATAATTATATTATTCTCCT
TCTACTATTTCTTTGT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTTTCCAGGTGTGAGCTAAGCACAGTACCT
ATCGAGCTCTGCAAATAATTACTAGCTTCCAAAACAAAGGGCTAAACAGA
GTGTTGCCTTCCCATCCTCCCCCTTCCCCAAGTAGTACATGAACAGAACA
AGCAAAATGAATTAAATCAGCCCTTTAAGTAAGCTTAAGTCATTATTTGG
CATGCAGCTGTAAGGTCCATCTATAATGGCTCTTCACGGCATGACATTTG
CTTCCAAGTGGATGTCTTGATAGATATGGCATCAAACCCCTTGCCTAAGG
AAAAACTTATTGAGGCACCCCCCCCCCCCCATTTCAAAGTGGAGTAGTTT
GCTATGACCATCCGCGATCATTAAAACAAACGAGAGTCTGACCAAACACA
TCTGCCATGTTTGAAAACCTTCTGCTTTCAGATGTCTGAGTGACATTCAT
AGCATATGGGGTAAGCACTCAGCTACTCAAGAAGTCTGTGGTCCGATAGT
ACACAGCAGGTGTGGTACTAAGGGCTAAGTTAAAGAGGTTCATGTATCTA
ATGACATCACAAAGCTTCTGTTGAAGCCAAGAAAGGAAACAGCAATCATG
TAAGCACAAAAATACTTGATTCCCCACAAATGTGGCCCCTTTTTAAAATT
CTTCCGGTACAAACAATTCCCACTTTCTCTGCCCTTCTGATGGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_i17.g1 MSMg01no164_i17.g1 CHROMAT_FILE:
MSMg01no164_i17.g1 PHD_FILE: MSMg01no164_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:26 2005
         (288 letters)



>mm_chr8_33445939_33446626
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttccaggtgtgagctaagcacagtacctatcgagctctgcaaataattactagcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttccaggtgtgagctaagcacagtacctatcgagctctgcaaataattactagcttc 260

                                                                       
Query: 61  caaaacaaagggctaaacagagtgttgccttcccatcctcccccttccccaagtagtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaacaaagggctaaacagagtgttgccttcccatcctcccccttccccaagtagtaca 320

                                                                       
Query: 121 tgaacagaacaagcaaaatgaattaaatcagccctttaagtaagcttaagtcattatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaacagaacaagcaaaatgaattaaatcagccctttaagtaagcttaagtcattatttg 380

                                                                       
Query: 181 gcatgcagctgtaaggtccatctataatggctcttcacggcatgacatttgcttccaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatgcagctgtaaggtccatctataatggctcttcacggcatgacatttgcttccaagt 440

                                                           
Query: 241 ggatgtcttgatagatatggcatcaaaccccttgcctaaggaaaaact 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatgtcttgatagatatggcatcaaaccccttgcctaaggaaaaact 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)