BAC Information

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BAC

Clone NameMSMg01-164K03
Chromosome8 (Build37)
Map Location 94,320,836 - 94,321,121
singlet/doubletsinglet
Overlap genenone
Upstream geneChd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628
Downstream geneIrx3, 4933436C20Rik, Irx5, Irx6, LOC100041325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164K03.T7 (MSMg01no164_k03.b1)MSMg01-164K03.TJ (MSMg01no164_k03.g1)
ACCAG363048AG363049
length883746
length of high quality
(start - end)
---286 (71 - 356)
definitionCHROMAT_FILE: MSMg01no164_k03.b1 PHD_FILE: MSMg01no164_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:32 2005CHROMAT_FILE: MSMg01no164_k03.g1 PHD_FILE: MSMg01no164_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCGTCCGCGGGGGCCTTCGCCAGCGCTATCCGCGAGAGGTCCCGGGCG
TTCTTGTTCTATATCACCAGAAGCACGACCCACAGTCAAAACCACCATCT
CCGCCGCCCCAGAGGCAATGTTCTGCGGTGCGTGCGTGATCAGGCCAGAT
CTCATATCTATTATCACCGCGAGAGGACGGGCAGGCTCTTCGTAACTCTT
TGACGAACTACTAGTAAACCTGATAATGAGGTGTATATGCTACCGCTGTC
TTTTCCCTCGCTGATCTTTCAGAATTGAGTTTTATCACGGCACACTGGAG
AATTATACAAACAAAACATAATTTATGGGGTTTCCATTTCCTTTTGATGT
AGGGGAGATTCGTCGCTTGGGCGACACGAGGTTACATACTATAGTAACAC
TCTTTATCCTATGCTCGGGGGCAAATTATGGACCGGGGGAGTTTTGCGTT
CATCTCATGACGTCCCCGCCCGAAACAGCCAAGAGAATTATGCAGCAACT
AACGCCATGGATTGATGGTCTAATTTAAGCCGGGATGATACAAATGGGTG
TGCAGGGGCGTGGGTGGTTNNCNNCGCCGCGGCTAGTTTTAATNNATTNC
GGANACCGCCGTGCTTTTAATCGCGGAAACGTNACATTCTAANTTATTGT
CCCCGGCAGCCGATTATATGNCCCGGGANNAGNATNGTGGTCGGTGTGTT
TCGTAAAGGGGATTTTTCTTTATTTGANTGGGTTTGTTGGGGGGCAAAAC
GTCGTGGGGGGGAATACGGAGCTGTGAAGATGGGCCCATTAGTGGCGCTT
AAAGAATTAAAATGTGGGGGGATAAAGTAGAGCTAGGAGCGGTGCAGAAA
GAATAATAAAAGTGTCGGGGCGTAGGGTGTTAG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGCCCTTGGCTTCCTGGGAAGTAAATGG
ATAGTCAGTGTGGGTCAGGGCTAAGCCCAGGAGGTAGGAACTAAGATGCC
CTTGTACAGATACTCATGGCACTAACCAGAGCCTTGACCCTTGTTCTGTG
GTACTGACTTCACATGTATGACCTAAGAAGATGGAGCGTCAATGCTTCAA
CTGTGAAAGACCTTGAACCCCTGAAACACCTTTGCAAACAGAGAAAGGAA
GTGTTTGCTTGAATATCAGTCCGTCCCCGTCCCCCCAACCCCCCGCTGTC
ACTGTCCTTTTCTTTGCTCCCGCCCCCCATTCTGAGGACTTTCGTTATGT
GGTTACCGGCCTTCATACAACAAAAAAAAAAGAACGCCCGTGGCTCTGGC
AGCTGTGTCCTCATCTCGTGGACCCGTACACTGCGGCGGTCCTCGCATAC
AGATCCTCAATGTTGATTGTGCTGCATCCAGACTGGAAGCTGATCCAGTT
TGTAAGCACTAGCTCTTTCTACCTTTCAACTGTGTTGCAGACCTTGTTCA
CGAAAGCCCTGCTCTGTAGTTCAGATGTTCTTTGGTTGGCTATCCCGGAT
ATTTCCAAAGGGCCAGACAAGGAAGGTCTCAAAGGGTCCCCCCACTTTCA
AACCCAATCTAAGGCGCTACTACTCTGAAAGGGGAATCTCCATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_k03.g1 MSMg01no164_k03.g1 CHROMAT_FILE:
MSMg01no164_k03.g1 PHD_FILE: MSMg01no164_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:32 2005
         (286 letters)



>mm_chr8_94320636_94321321
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcccttggcttcctgggaagtaaatggatagtcagtgtgggtcagggctaagcccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcccttggcttcctgggaagtaaatggatagtcagtgtgggtcagggctaagcccag 260

                                                                       
Query: 61  gaggtaggaactaagatgcccttgtacagatactcatggcactaaccagagccttgaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtaggaactaagatgcccttgtacagatactcatggcactaaccagagccttgaccc 320

                                                                       
Query: 121 ttgttctgtggtactgacttcacatgtatgacctaagaagatggagcgtcaatgcttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttctgtggtactgacttcacatgtatgacctaagaagatggagcgtcaatgcttcaa 380

                                                                       
Query: 181 ctgtgaaagaccttgaacccctgaaacacctttgcaaacagagaaaggaagtgtttgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgaaagaccttgaacccctgaaacacctttgcaaacagagaaaggaagtgtttgctt 440

                                                         
Query: 241 gaatatcagtccgtccccgtccccccaaccccccgctgtcactgtc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatatcagtccgtccccgtccccccaaccccccgctgtcactgtc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)