Query= MSMg01no165_f20.b1 MSMg01no165_f20.b1 CHROMAT_FILE:
MSMg01no165_f20.b1 PHD_FILE: MSMg01no165_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:29 2005
(400 letters)
>mm_chr8_113455887_113456686
Length = 800
Score = 710 bits (367), Expect = 0.0
Identities = 393/407 (96%), Gaps = 11/407 (2%)
Strand = Plus / Plus
Query: 1 gcagtaagtgcctctacccactggttttgctttgatgtttaaggtctccttccatagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gcagtaagtgcctctacccactggttttgctttgatgtttaaggtctccttccatagctt 257
Query: 61 aggacctggacccttctaattttggacaagattgtccttaaatgacaatggccttgtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aggacctggacccttctaattttggacaagattgtccttaaatgacaatggccttgtgtt 317
Query: 121 cttctgtcctctgcctcctaagtttgtttgtttgttttgttttgttttgtttcatttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cttctgtcctctgcctcctaagtttgtttgtttgttttgttttgttttgtttcatttttg 377
Query: 181 ttgttgttgttgttgtt---tgattacaggtgtcttggcttggcttgttttggttttaag 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttgttgttgttgttgttgtttgattacaggtgtcttggcttggcttgttttggttttaag 437
Query: 238 gtctctgctgttcatacctgatgacaacttgcctttggggagtcctacctctgctctgga 297
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 438 gtctctgctgttcagacctgatgacaacttgcctttggggagtcctacctctgctttgga 497
Query: 298 acattattaggaggtgtggctgtttgtgggtggggtgcgtttacattcccc----acatt 353
||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 498 acattattaggaggtgtggctgtttgtgggtggggtgcgtttacatt----ttggagatt 553
Query: 354 acttgaaattccccgtggaggtgaagtttgagaggatctcttcagta 400
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 acttgaaattccccgtggaggtgaagtttgagaggatctcttcagta 600
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_f20.g1 MSMg01no165_f20.g1 CHROMAT_FILE:
MSMg01no165_f20.g1 PHD_FILE: MSMg01no165_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:29 2005
(464 letters)
>mm_chr8_113620054_113620917
Length = 864
Score = 816 bits (422), Expect = 0.0
Identities = 428/430 (99%)
Strand = Plus / Minus
Query: 1 ctccctgagaaaccctaccattcccagtcctttgtcactgtttgctcaataaacttatga 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctccctgagaaaccctaccatgcccagtcctttgtcactgtttgctcaataaacttatga 371
Query: 61 tctctcggcaagacaggaagaaaaggacaaacaggagattcaggaaagaacaaagcacgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctctcggcaagacaggaagaaaaggacaaacaggagattcaggaaagaacaaagcacgt 311
Query: 121 ttaatgcccagtctgataaggccaagaaaagaatgttgactctgtgatcatcatgacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttaatgcccagtctgataaggccaagaaaagaatgttgactctgtgatcatcatgacctt 251
Query: 181 caagagtgaagagatgagggcagaaaagactgaagtataccaggaagggagggctagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 caagagtgaagagatgagggcagaaaagactgaagtataccaggaagggagggctagaga 191
Query: 241 gatgtctcagtggttaagaacgttactgttcttgcacagggcctgggtttgattcccaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gatgtctcagtggttaagaacgttactgttcttgcacagggcctgggtttgattcccaac 131
Query: 301 tcccacaaggaggtaacaatctttaacttcagttccagtgaatccaatgccttgactttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tcccacaaggaggtaacaatctttaacttcagttccagtgaatccaatgccttgactttt 71
Query: 361 gtggatatcaagcgtggacatggtgcacaaacgtacacataggcaaaacactcataaaat 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gtggacatcaagcgtggacatggtgcacaaacgtacacataggcaaaacactcataaaat 11
Query: 421 aaaatgtgat 430
||||||||||
Sbjct: 10 aaaatgtgat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
