BAC Information

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BAC

Clone NameMSMg01-166B03
Chromosome8 (Build37)
Map Location 85,598,582 - 85,714,830
singlet/doubletdoublet
Overlap geneRnf150, LOC100039688, Tbc1d9
Upstream geneInpp4b, LOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
Downstream geneUcp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166B03.T7 (MSMg01no166_b03.b1)MSMg01-166B03.TJ (MSMg01no166_b03.g1)
ACCAG364009AG364010
length743743
length of high quality
(start - end)		583 (47 - 629)368 (77 - 444)
definitionCHROMAT_FILE: MSMg01no166_b03.b1 PHD_FILE: MSMg01no166_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:28 2005CHROMAT_FILE: MSMg01no166_b03.g1 PHD_FILE: MSMg01no166_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,598,582 - 85,599,159)(85,714,463 - 85,714,830)
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTATCCCCTTCAGGCCTGCAATCCTTCCTCCTATTCTTCCATAA
GAGTCCCCAAACTCAATTCACTGTTTGGGTATCTGCATCTCTCTGACTCA
GCAGCTGGGTGGAGCCTCTCAGAGAACAGCCATGCTAGACTCTGGTCTGC
AAGCATGACAAAGTATCATTAATAGTGTCAGGAACTGGTGCTTGCCCACG
GGATAGGTTACATCTCGATTTTTAAAAGCATTGTACTTCCAAAGAAAATG
TCTCCGGGAACACCAGTTTGCATTCTTGCCTCTAGATTTTAGGGCTCCTG
GGAGATCTTCCCAATCTGTCTCTTTCTAGACACTCTTATGTGTTGCCACA
ACCTCAGTACAAGCCAGTACTTCTGTAAGCCGTGCAGTGTTCACATGCGC
GCCACCGCCACATCTCCTTGGAAGATCGCACGAGCCATGCTCAAAGCCAA
ACTCTCCATCTTCAAACCTGTTCCCTTCCATGTTCTCTGGCTAACTCATG
GTACTACAGACGCTCAAGAGATGTGATTCCAGATCATCACTTTTCTGCTA
ACCCTTCATCAGTTGTCCGTTTCCTCTGTCTCACGGGCACACACTGTATT
CACTGGCTTTTCTGAGGTACTCCTCTAACCAGATTCTTTCTGTCTTTAAT
TATATGCTAAGGGGAGCCCCTTAAATATTTTATGGATCTTCTT

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGGAGTGCTTACGTTTCCAA
TGGTCTTATAACAAGGTCATCTTGCTCAGTGGTGTCTAGAACTATTGTCC
TATGCATGAATGCCTATTCTGGTAACTGTCTAGCATTCCATTTCTCCAGA
CTCTGAGTCCTTTTGGCTGGTACTACGTGCCTGTCTCCACCTAGACCTTT
GCCAACCGGTTATGAGACACACAATGCCTCCATTCTAGCTTTATTACAGG
TGTGGTCTCCCATCACCAGCCCAGAACTTATCACCTTCCATATTCTAGAG
TTCCTACAAGGCCTGGGGTCTCTTTGTCTATCTTTGGAAATAAGTGATGT
TCAAGGTCTAGTGACAGAAACCCCTATCTAGGGAGTGACATACAGAAGCT
AGGAAGGAACAGTCTGAGATGCTCCGATGACCACAGCCACTTCCCCAAAA
GACTTGTATTCTCAAAAGAAAAAAAAAATGGAGGGGAACACCTAAAGACT
AAAAAACCCTGATGGCACGAGGCACTAGAAACCACATCCCGGAGTCAAGT
TTGAATCCCCTTCCCTTCGATCTTTGAGTTTGGTCTTGCGTACACGCTAT
TTTTCTGGAGCCTGGATTAGTTTGATCATAGAGATGGTTGCTTCCCCGAA
TTGTTTCCCTATCTCTTTTTTTTTTGTACTACCCTTCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_b03.b1 MSMg01no166_b03.b1 CHROMAT_FILE:
MSMg01no166_b03.b1 PHD_FILE: MSMg01no166_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:28 2005
         (583 letters)



>mm_chr8_85598379_85599361
          Length = 983

 Score = 1102 bits (570), Expect = 0.0
 Identities = 576/578 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctatccccttcaggcctgcaatccttcctcctattcttccataagagtcccca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctatccccttcaggcctgcaatccttcctcctattcttccataagagtcccca 263

                                                                       
Query: 64  aactcaattcactgtttgggtatctgcatctctctgactcagcagctgggtggagcctct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactcaattcactgtttgggtatctgcatctctctgactcagcagctgggtggagcctct 323

                                                                       
Query: 124 cagagaacagccatgctagactctggtctgcaagcatgacaaagtatcattaatagtgtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagagaacagccatgctagactctggtctgcaagcatgacaaagtatcattaatagtgtc 383

                                                                       
Query: 184 aggaactggtgcttgcccacgggataggttacatctcgatttttaaaagcattgtacttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggaactggtgcttgcccacgggataggttacatctcgatttttaaaagcattgtacttc 443

                                                                       
Query: 244 caaagaaaatgtctccgggaacaccagtttgcattcttgcctctagattttagggctcct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaagaaaatgtctccgggaacaccagtttgcattcttgcctctagattttagggctcct 503

                                                                       
Query: 304 gggagatcttcccaatctgtctctttctagacactcttatgtgttgccacaacctcagta 363
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 504 gggagatcttcccaatctgtctctttctagagactcttatgtgttgccacaacctcagta 563

                                                                       
Query: 364 caagccagtacttctgtaagccgtgcagtgttcacatgcgcgccaccgccacatctcctt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caagccagtacttctgtaagccgtgcagtgttcacatgcgcgccaccgccacatctcctt 623

                                                                       
Query: 424 ggaagatcgcacgagccatgctcaaagccaaactctccatcttcaaacctgttcccttcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggaagatcgcacgagccatgctcaaagccaaactctccatcttcaaacctgttcccttcc 683

                                                                       
Query: 484 atgttctctggctaactcatggtactacagacgctcaagagatgtgattccagatcatca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgttctctggctaactcatggtactacagacgctcaagagatgtgattccagatcatca 743

                                                 
Query: 544 cttttctgctaacccttcatcagttgtccgtttcctct 581
           ||||||||||||||||||||||||||||| ||||||||
Sbjct: 744 cttttctgctaacccttcatcagttgtccctttcctct 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_b03.g1 MSMg01no166_b03.g1 CHROMAT_FILE:
MSMg01no166_b03.g1 PHD_FILE: MSMg01no166_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:28 2005
         (368 letters)



>mm_chr8_85714263_85715030
          Length = 768

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaggagtgcttacgtttccaatggtcttataacaaggtcatcttgctcagtggtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tctgaggagtgcttacgtttccaatggtcttataacaaggtcatcttgctcagtggtgtc 509

                                                                       
Query: 61  tagaactattgtcctatgcatgaatgcctattctggtaactgtctagcattccatttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tagaactattgtcctatgcatgaatgcctattctggtaactgtctagcattccatttctc 449

                                                                       
Query: 121 cagactctgagtccttttggctggtactacgtgcctgtctccacctagacctttgccaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagactctgagtccttttggctggtactacgtgcctgtctccacctagacctttgccaac 389

                                                                       
Query: 181 cggttatgagacacacaatgcctccattctagctttattacaggtgtggtctcccatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cggttatgagacacacaatgcctccattctagctttattacaggtgtggtctcccatcac 329

                                                                       
Query: 241 cagcccagaacttatcaccttccatattctagagttcctacaaggcctggggtctctttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cagcccagaacttatcaccttccatattctagagttcctacaaggcctggggtctctttg 269

                                                                       
Query: 301 tctatctttggaaataagtgatgttcaaggtctagtgacagaaacccctatctagggagt 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 268 tctatctttggaaataagtgatgttcaaggtctagtgacagaaacctctatctagggagt 209

                   
Query: 361 gacataca 368
           ||||||||
Sbjct: 208 gacataca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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