BAC Information

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BAC

Clone NameMSMg01-166D20
Chromosome8 (Build37)
Map Location 77,922,157 - 77,922,653
singlet/doubletsinglet
Overlap geneLOC666211
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845
Downstream geneLOC100039229, 1700007B14Rik, LOC666036, LOC100039185, EG631594, LOC666226
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166D20.T7 (MSMg01no166_d20.b1)MSMg01-166D20.TJ (MSMg01no166_d20.g1)
ACCAG364127AG364128
length772761
length of high quality
(start - end)		338 (46 - 383)497 (76 - 572)
definitionCHROMAT_FILE: MSMg01no166_d20.b1 PHD_FILE: MSMg01no166_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:40 2005CHROMAT_FILE: MSMg01no166_d20.g1 PHD_FILE: MSMg01no166_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACCCCTAATCCCCTTACCCCATAAAAACCCCTAGCTTTCGAG
CCTCGTGGCCGACATCCGTTATCTCCTGTGTGGGATACATGTCGATCTGG
AGCTCCGTGATTAAACGTCCTCATGTATTTACATAAAGATGGTCGTCTGT
TCGTGATTCTTGGGTGTACGCTGAATCGGGAGTTGAGTGGGGTTTTCCCA
CTAGGTTCTAACACTGACAGTCAGTGACGGACAACCAGATCACGAAATCA
TACCAATCTAAGACAGGGGTACATGCCTTAAGGCCGTGGTTGTTGATAAA
CACCACAGAGCCATGTTTGTGTACATTATTACACAGACTAGCTACACATA
TCCTCCTATGACTAACCCCCCCCCCTTTGAGAGAATCTGAGATCCTTAAT
ACATATGGCGCTGCCACCCACCATAATTCCCAGGCCGGACTTTTGAGTAT
ATCTATATTTCACGCCTCACTTTTTGCTTGTTCACTATTATTTTATTTTT
CCACACTTTTTTTTTTTTTCCCCTTTATTTTCGCTTGCTTATTCCCCTTC
CCCTATTCACCCTTTCCCTTTTTTCTCCCCTTTTTCCCCTTTTATTCCCC
TTCCTCCCTTTTTTTTTCCCCCCCTTTTCCCTTATCATTACCCACACTTT
TTTTTTACACCTTTTACCCTCCTCCCCCTTTTTCCCCCCCCCCCTTTTTT
CTCTTCCCTCCTTTTTTCTCTC

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGGAGAGAGAGATATGCTGTGAC
ATGTCCATGCCATTCTTCCCTAGCTACTGAGCCTTCTGCTTTGCCCATAA
TATAATCCATTAGTTCTCTGCCAGGTGCTTCAGCAACGATGAAATACTCT
GGCCAGTGCGCAAGGTACTGTAAGTAAAAAGGAATCCCATAAGTTTCTGT
AAGTGGATCCAAGTTAATGTTGTTGAAGCGGAACAGGTCGTCGCAGGTGA
AGGCCCGGAACGTGGTCATTGCGCCGCCCGAGATATTGTTTTTTGAAATA
GCCTTTAAACTTGACTCTTTAAAATTCCTTTCTGCTGATTTTGGGATGGA
ATCCCAGGTGGAGCACCCCCCGGATGGTCCATCCTTTCGTCTTAGCTCCA
AACTTTGTCTCTGCAACTCCTTCCATGGGTATTTTATTCCCTATTCTAGG
GAGGAATGAAGTATCTACACGTTGGTCTTCCTTCTTGATTTTCTTGTGTT
TTGGAAATTGTATCTTGGGTATTCCAGGTTTGTGTTCTAATATCCACTTT
ATCAGTGAGTGCACATCAGGTGACTTCTTTTGTGATTGGGTTACCATTAC
TGTGAAAACTCCATTTTCATGAATTGTTATCATTTGTTCTCTTCTTCTTT
CTCTCCTTATTTACCCCCTAACTAATTTCTTCTATATTTTAGACTTATCT
TTTTTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_d20.g1 MSMg01no166_d20.g1 CHROMAT_FILE:
MSMg01no166_d20.g1 PHD_FILE: MSMg01no166_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:40 2005
         (497 letters)



>mm_chr8_77922146_77923042
          Length = 897

 Score =  922 bits (477), Expect = 0.0
 Identities = 492/497 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggggagagagagatatgctgtgacatgtccatgccattcttccctagctactgagcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aggggagagagagatatgctgtgacatgtccatgccattcttccctagctactgagcctt 449

                                                                       
Query: 61  ctgctttgcccataatataatccattagttctctgccaggtgcttcagcaacgatgaaat 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 448 ctgctttgcccataatataatccattagttctccgccaggtgcttcagcaacgatgaaat 389

                                                                       
Query: 121 actctggccagtgcgcaaggtactgtaagtaaaaaggaatcccataagtttctgtaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actctggccagtgcgcaaggtactgtaagtaaaaaggaatcccataagtttctgtaagtg 329

                                                                       
Query: 181 gatccaagttaatgttgttgaagcggaacaggtcgtcgcaggtgaaggcccggaacgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gatccaagttaatgttgttgaagcggaacaggtcgtcgcaggtgaaggcccggaacgtgg 269

                                                                       
Query: 241 tcattgcgccgcccgagatattgttttttgaaatagcctttaaacttgactctttaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcattgcgccgcccgagatattgttttttgaaatagcctttaaacttgactctttaaaat 209

                                                                       
Query: 301 tcctttctgctgattttgggatggaatcccaggtggagcaccccccggatggtccatcct 360
           ||||||||||||||||||||||||||||||||||||||||  | | ||||||||||||||
Sbjct: 208 tcctttctgctgattttgggatggaatcccaggtggagcagtctctggatggtccatcct 149

                                                                       
Query: 361 ttcgtcttagctccaaactttgtctctgcaactccttccatgggtattttattccctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 ttcgtcttagctccaaactttgtctctgcaactccttccatgggtattttattccctatt 89

                                                                       
Query: 421 ctagggaggaatgaagtatctacacgttggtcttccttcttgattttcttgtgttttgga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  ctagggaggaatgaagtatctacacgttggtcttccttcttgattttcttgtgttttgga 29

                            
Query: 481 aattgtatcttgggtat 497
           |||||||||||||||||
Sbjct: 28  aattgtatcttgggtat 12


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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