BAC Information

Click to search

BAC

Clone NameMSMg01-166H09
Chromosome8 (Build37)
Map Location 101,152,879 - 101,153,195
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166H09.T7 (MSMg01no166_h09.b1)MSMg01-166H09.TJ (MSMg01no166_h09.g1)
ACCAG364279AG364280
length759807
length of high quality
(start - end)
314 (48 - 361)318 (77 - 394)
definitionCHROMAT_FILE: MSMg01no166_h09.b1 PHD_FILE: MSMg01no166_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:58 2005CHROMAT_FILE: MSMg01no166_h09.g1 PHD_FILE: MSMg01no166_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCCTCTGAAGAAACAGACTTGGAGGAGGAAGCAGCTCATTATG
AGAGAAAAGGGTACCAGCCAGATAAAATGCTAGCTAATCAGTTAAGGAAA
AAGCCAAAAGCGGCTGGTGAAGGCCAGCATGCTGTTCAGCCTCCGGGCAG
TCGGCTTCAAGGTCATAGTGCACTTCCGCCCTATGCGGAGCCCCCGCCCT
GCGTAGTGCGTCAGCCCTGCGCAGAGAGACAATGCGCAGAGAGGCAATGC
GCAGACTCATTCATTCCCAGAGAGTAACAAAGGAAAATACAACAGGCATT
TCCGGTCTTTGATTTTTTTGAGCCCCCCCCCCCCCACGCTCCGGTAGAAT
ATGTGTATATTTTTCCCCCCCCCCCCGAAAAAAAATAAATATGGAACCGA
TGCTAATTTTACCTTGGTGCACTTAGACAGGCTTGCTGGCATGTCACTAA
CTCCTGTTGAATGGTATATGATTGAAAAAGCCGCTCTCCCAAGTATGGTT
AAATATATGGAATGAAAAGCTCATTGTTAAAAATATACACTACTGTATAT
TCGAGATAACTCTTCTGCCTTGTCTCCTAATCATATACACTGACCCCACC
GAATTGTTCTATCTTTATGTATCTTATACCCCCTCCCCACACTATTAACC
TCTTTTCAATCTTTTTCCCTACCCCCCCCCCATCACTCACCACTAATCAA
ATCTTTTTG
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAAGTCTTTATATGATCAGTA
CATCTGCCACCTTTATTTGCCCTTGTGTTTATGTTATCTTCTTTCTGGAA
TAAAGTTTCAAATGATAGTATTCAAGCAAAGAACACGATGCTAAAGACCA
GAATAAACCCTAAATAGGCAGCTTACTTGCATGATAGTGACAGTCAGGGA
TTTCAAAACTCTTTCTTTAAACTCAATTCCAATACATCATTTAGAACACC
ACAAGCTTTGTAAAATAAATTATATTTTCTAAGGACATTTACATAGAGAA
AGTATAAATAAAAAATAGGATGTCCAGAAAATGGCGGTAGGGGGGGGTAG
GTTTTTNTAAATTAACCCCCCCCTTTTTCAAAATAAAAGAATATTAATTT
ATTAATATTATAATTAATTTTTTTAAACCCCCTCTTATTTTATTATTTTA
TTTTAATAAACCCTTCATCTTATTTTTTTTTTTATACACCCATTCCCTTC
TTTTTTTTTATAATTTTAATTATTTTAATACCAATATTCATTTTCGCTTA
TTATATAAATTTTTTACCTTGTTGTATCCACTCTTTTTTTACTTCTTTTT
ATTTTAATAAATATAATATATAACCACTTATATATAATCTTTTTTTTTTC
GTTCCCCTTTTCATACCATATTTATAATTACACCTCTACCTTATCACTAT
TTATTCACAATCATATTCATTCTCCTTATTCTAAATTATAGCTCTATTAT
ACATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_h09.g1 MSMg01no166_h09.g1 CHROMAT_FILE:
MSMg01no166_h09.g1 PHD_FILE: MSMg01no166_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:58 2005
         (318 letters)



>mm_chr8_101152679_101153396
          Length = 718

 Score =  569 bits (294), Expect = e-166
 Identities = 312/322 (96%), Gaps = 9/322 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaagtctttatatgatcagtacatctgccacctttatttgcccttgtgtttatgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaagtctttatatgatcagtacatctgccacctttatttgcccttgtgtttatgtta 260

                                                                       
Query: 61  tcttctttctggaataaagtttcaaatgatagtattcaagcaaagaacacgatgctaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctttctggaataaagtttcaaatgatagtattcaagcaaagaacacgatgctaaag 320

                                                                       
Query: 121 accagaataaaccctaaataggcagcttacttgcatgatagtgacagtcagggatttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accagaataaaccctaaataggcagcttacttgcatgatagtgacagtcagggatttcaa 380

                                                                       
Query: 181 aactctttctttaaactcaattccaatacatcatttagaacaccacaagctttgtaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactctttctttaaactcaattccaatacatcatttagaacaccacaagctttgtaaaat 440

                                                                       
Query: 241 aaattatatttt----ctaaggacatttacatagagaaagtataaataaaaaataggatg 296
           ||||||||        | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattata----aaaacaaaggacatttacatagagaaagtataaataaaaaataggatg 496

                                 
Query: 297 tccagaaaatggcggtaggggg 318
           |||||||||||||||| |||||
Sbjct: 497 tccagaaaatggcggt-ggggg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)