BAC Information

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BAC

Clone NameMSMg01-166J10
Chromosome8 (Build37)
Map Location 108,579,379 - 108,579,609
singlet/doubletsinglet
Overlap genenone
Upstream geneEs31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l
Downstream geneNfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166J10.T7 (MSMg01no166_j10.b1)MSMg01-166J10.TJ (MSMg01no166_j10.g1)
ACCAG364372AG364373
length753784
length of high quality
(start - end)		370 (44 - 413)277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no166_j10.b1 PHD_FILE: MSMg01no166_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:08 2005CHROMAT_FILE: MSMg01no166_j10.g1 PHD_FILE: MSMg01no166_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGG
AATTCAATCCCCAATTCCCATAAAGCCATAAGTAAAAGTAAGTTTTAAAG
AGAAAACCCTGTTAAAGGGGCTAGCACGATTGCCCTTGCCAACCCAAGCC
CACTGAGCTGAGTTAGCTCCCTGAGAACCACATAAAGATGGAAGGAGAGG
AATGATTTTCCAAACTCACCCTCTGTTACCAGATGCCTCCCCCAACAGAG
TAATCAATAAACAAGAAATACATATAGTTCAAGGCTAGCTCAGACTGCAC
AAGAAACTATCTCAAGACAAAAGAGAACATCCCCCCCCCCCCATAAGTCA
GGCTAAGGAGAGCGCTGCAATCAAGGATATGAATGGGTGGGTACTACTAC
TTCTCTCCCAGGACGTTTCCCCCCCAACTCTTAAGTGAATTATTCCGAGA
GCATACAGGGAGAGACTATGTCTTCCGGCCTGACTAGGCCTTTCACTCAT
TCCCAGATCCTCGTTTTGTCGATGAGATCTGGTCACCGCATACATCACGT
TTTTATGCTAACGTTCTTTTTGTTCAAGGATTACCCGGTTCATCCGGCAT
CTTTGCCATTCATGCCCTATTCCCGGTTTCCCCCTTCCCTCCCTCTTATT
ACCCGCCTTTCCCCCTTCTTCTTTGGTTCTTCTTAATTTCCCCCTTATCC
CCCTTTCCCGCTTTTTGCCCCCTCCCTTTTTCCTATCCTCCCTTGTTCCC
CCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAGGCTACACAGAG
AAACCCTGCCTCAAAAACAAAACAAAACAAAAGGTTGTTTTCTGACCTCT
ATATGCATGATATACACAAAGCACACATTATACACATATACAAATAATGA
TGATGATGATGATGTTTTTGAGATAATAGTCCTGGCTGGCTTAGAACTTG
CTACATTACCTGCTTCTTCTGCCTTCAAAGTACTGGGAATAAAGGTCTGT
GCCACCATATGTGTCACATATATTTATATTTATATATGAATGATAGGTTT
TGNTTCTTTTNTANTTCTCTTCCTCCTTTCCCCTTCTTCTTTCTTCCTTC
CGTTTTTCTCCTTTCTCCCCCCCCCCNNNNCCTTTCCCTTCCCTATTTCC
CTCACTTCTCTTCCATCATCCCCCTTTTCTTCTATATTTATTTTCTGCCC
CTTTCTTTTTCTTTCCCATTTTCCTCTTTCACTCCTTTTCCTTATTTACT
CTCTTCTCTAATTATCTACACACCCATTTCATCTTTTTCATCCCTCCTCT
CCTTCATTCTTCCCTATCCTCATTTCCTCCTACCCCTTTTATCTCTACTC
TTTTTCTTCTACTTCTCTAACTAAATTCTTCTTCTAACTTTTTTTCTTCT
TTAACTCTTTCTCCTTCCCTTCATCTTCTTATTCCTTTATTTACTTATTC
TCTCTTTAACTGTATCTTCACCCTTTCCTCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_j10.b1 MSMg01no166_j10.b1 CHROMAT_FILE:
MSMg01no166_j10.b1 PHD_FILE: MSMg01no166_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:08 2005
         (370 letters)



>mm_chr8_108578994_108579760
          Length = 767

 Score =  383 bits (198), Expect = e-110
 Identities = 224/234 (95%), Gaps = 4/234 (1%)
 Strand = Plus / Minus

                                                                       
Query: 138 cataaagatggaaggagaggaatgattttccaaactcaccctctgtta-ccagatgcctc 196
           |||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||
Sbjct: 616 cataaagatggaaggaaaggaatgattttccaaactcaccctctgatatccagatgcctc 557

                                                                       
Query: 197 ccccaacagagtaatcaataaacaagaaatacatatagttcaaggctagctcagactgca 256
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 556 ccccaacagagtaatcaataaacaagaaatgcatatagttcaaggctagctcagactgca 497

                                                                       
Query: 257 caagaaactatctcaagacaaaagagaacatccccccccccccataagtcaggctaagga 316
           ||||||||||||||||||||||||||||||   ||||||| | |||||||||||||||||
Sbjct: 496 caagaaactatctcaagacaaaagagaaca---cccccccacaataagtcaggctaagga 440

                                                                 
Query: 317 gagcgctgcaatcaaggatatgaatgggtgggtactactacttctctcccagga 370
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 gagcgctgcaatcaaggatatgaatgggtgggtactactacttctctcctagga 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 767
Length adjustment: 9
Effective length of query: 361
Effective length of database: 758
Effective search space:   273638
Effective search space used:   273638
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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