BAC Information

Click to search

BAC

Clone NameMSMg01-166L19
Chromosome8 (Build37)
Map Location 31,919,435 - 31,919,749
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166L19.T7 (MSMg01no166_l19.b1)MSMg01-166L19.TJ (MSMg01no166_l19.g1)
ACCAG364468AG364469
length745734
length of high quality
(start - end)
325 (47 - 371)315 (75 - 389)
definitionCHROMAT_FILE: MSMg01no166_l19.b1 PHD_FILE: MSMg01no166_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:19 2005CHROMAT_FILE: MSMg01no166_l19.g1 PHD_FILE: MSMg01no166_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATCTTAAACATGGTTGAGTAATATTTTTTTCTGTAAATGGACC
ACATTTTCTTTATCCATTTTCCATTGATGGGCATGTCGTCTGCTTCCATT
TTCTAGCTATTATGAATAGAGTACAAAGAACATGGATGAACAAATGTCTC
TGAAGTGGGATGTAGTCTTTTGGGCAGATGCTCAAGGGTGCTTTACATGG
ATTTTGAGGAAGATCTATTCCTGTCTTTCTGAGAAGCTGCCACGCTGATT
TCCATAGTGGCTATACAAGTTTGCAGTCCTACAAGTGATGGGTGAATATT
CCATTTATTCTGCCATTCTGTTATCTGCTGCCCACCCTATTGATCTTATA
CAGTCTAACTGGTGTAAAATGAACTCTCAGCATAGATTTGATGTGCACTT
CCCTGATGACTAAGGATGCTGAACATTTCTTTAAGTGTATTTCAGCCATT
CGTGGTTCTCTTTTGAGAATGCTCTGTTTAGATCTGTACCCAATTTTTAA
TTGAGTTATTTTTTTTCTTGGTGTCCAGTTTTCTTTAGNTATTTATATAT
TTTAGACATTAGGCCTCTATTGGATGTGTAGATGCTAAAATCTTTTCCAT
TTTGTAGCTTGTTGCTTTGTCTGAAAGAGGCTGCCCTTTGTCATACAGAA
GCTTTTTAGTGTCTCGAGGCCCATTTCTTAATTGTCGTTTTGAGG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATAGACACAAAATGATAATAAATAG
CTTCAGACCAATTGGATTTAAATGGACACAGTCCTAGAAAAACGTAGCTC
ATCAAAACTGATGACAAGTATGGAATATGATTGCATGTTTTATTGTCCAG
AAATTGACTCCACAATTTCAAAACACCTCTCTCTTTATCCAGAAAGAAAA
GGGTAGAGGCTTTTTGCAGTGAGTAGTAGTGGCTGCAGAGACTTATAACT
AGTGTAAGTGTGGATAATGCGCTAATGTGCACATATACATCCCCCCACCA
AGGCTTGGAGAATAAGANATGGAAAGAATAGAAGAGCTGGAGACTTGGGG
GATTGCATTGAAGGGCTCCCTCACGGACATGGCATGGCTGTTGTATGAAT
TCAGTGCATGCAGCACAAGCCCTGCCTAAGACAGCCTGTTAATAATACAT
TACAGGTGGGAAAAAGGGGCCCATANNNAAAATCCCTAAAACTCCCTTAA
AAAAGATTTATGGTGGCCCTTGGTTATCTCTTTTGTTGAGANANTATTAT
TTAACTAAAGACATTTNNCCTTNTNTNTNTTTTTCATTTTCNCCCANTAC
TCTCCTTTTTAATAATCTCTCCCCCAATTATTATATTACTCCATCCTTTT
CGTTTTCTTCCACGACCCCCTCCTTTCCACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_l19.g1 MSMg01no166_l19.g1 CHROMAT_FILE:
MSMg01no166_l19.g1 PHD_FILE: MSMg01no166_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:20 2005
         (315 letters)



>mm_chr8_31919235_31919949
          Length = 715

 Score =  580 bits (300), Expect = e-170
 Identities = 311/315 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagacacaaaatgataataaatagcttcagaccaattggatttaaatggacacagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatagacacaaaatgataataaatagcttcagaccaattggatttaaatggacacagtcc 260

                                                                       
Query: 61  tagaaaaacgtagctcatcaaaactgatgacaagtatggaatatgattgcatgttttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaaaaacgtagctcatcaaaactgatgacaagtatggaatatgattgcatgttttatt 320

                                                                       
Query: 121 gtccagaaattgactccacaatttcaaaacacctctctctttatccagaaagaaaagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccagaaattgactccacaatttcaaaacacctctctctttatccagaaagaaaagggt 380

                                                                       
Query: 181 agaggctttttgcagtgagtagtagtggctgcagagacttataactagtgtaagtgtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggctttttgcagtgagtagtagtggctgcagagacttataactagtgtaagtgtgga 440

                                                                       
Query: 241 taatgcgctaatgtgcacatatacatccccccaccaaggcttggagaataaganatggaa 300
           ||||||||||||||||||||||||||||||| |||||||||||||||||| |  ||||||
Sbjct: 441 taatgcgctaatgtgcacatatacatccccctaccaaggcttggagaataggggatggaa 500

                          
Query: 301 agaatagaagagctg 315
           |||||||||||||||
Sbjct: 501 agaatagaagagctg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)