BAC Information

Click to search

BAC

Clone NameMSMg01-166N14
Chromosome8 (Build37)
Map Location 17,735,798 - 17,843,866
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1, Angpt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166N14.T7 (MSMg01no166_n14.b1)MSMg01-166N14.TJ (MSMg01no166_n14.g1)
ACCAG364545AG364546
length746753
length of high quality
(start - end)		347 (72 - 418)458 (78 - 535)
definitionCHROMAT_FILE: MSMg01no166_n14.b1 PHD_FILE: MSMg01no166_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:28 2005CHROMAT_FILE: MSMg01no166_n14.g1 PHD_FILE: MSMg01no166_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,843,524 - 17,843,866)(17,735,798 - 17,736,255)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACTTATTCTCCGACACCTCATAAATTCTAAGATGCCATGTAG
GAGAAGAACATTCCTAAGTTTGGAAACTGATCTGGAGGAGATACGTGAGC
CTATTAGTCACTGTGCAGAAGGTTATACCATACACATTTAAACTGTTTAC
CACCTGCCGTGTACTGCATATTTTCATTCTTCTTGAACATGGCTTTAAAA
GTGATGTATTGTTTTATAATAAAACATGCACTCATCTCTAAAATCTAGTG
CTTTAGTCCCAGCAAAGATCTTTGCCGTTGTAATGCATGATGATCCTTCA
TGCTTCTTTTCCTCCTTGTGGGATCTCCTGTTTGTTTCCTTGATTGCTAT
CTCATATTGTCTTTCACATCCCCCATACATTCTGATTATTCTGACCTCTT
ATCTCAGTTAAGTTCCTCTTTACCCTCGAATTTCCTTTTCACACCTTTTT
TTCACCTCCCGTTTTCTGACCTATTGAGTTTGACCTATGCTCTCTGTTTT
TTTGTGCCCCTTTTTTTGTCCCCCCCTATCCCCTTCCCTTATTCCCGTTC
CTTTTTCCTCCCTTTTTCCCCTTTTCCCCCCTCCCCCCCCTTTTTTCCCC
CCCCTTCCCCTTTTCTTTTTCCCCTTTTATTTTACCACTTTCCTTTTCTT
CCCTTTTTTCCCCCCCTCCCTTTTTTGTTCCCTCCTATTCTCCCCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGACTCAGCTTTCATTGAGC
TGAGATAACATTTTGAAAACTCTAGAATAAGTTCACTATAAAATAAAGAC
TTAGAAATCAGGATAGAAATGAAATGTTCTGCCACTCTCTGAGCATAATA
GAACTTACCCTGCTTGCTTTATCCAGTTGAGAAGGGTGCTGTGAACTACA
GGAGAGGAGTCACACCCATTTGTCCATCTGTTAATTGGAAACTGGGCATT
TTCAATTGATGTTGCAAATGGAAAGGGGTTTTGAAGGTCTCATAAATGAA
TGGTTTTACATGTGTGGATTGGTCAACATCAGTATCTAGTTTCCAAGATG
TCCCCTCATATTCTGGCTACCCACCACAGTATCTCTAAGTTGAGTGTAGT
ATGCTGGACACAGTGGCATGCTACTGCTGACATTGCACTGTGAAGTTAAG
AGCTTTTGTCTTGACATTTCTCTTGCACTGTGATCACTAACCTGAAGAAA
TTCCACCATCATCCCATATGCAGTCTATGGAAAAACTGGAGAGCTGACAT
CTATAACTATAGCTATGTGAGTATTTGTAAGAGGGTTTTTCAGCCCCTTT
TACCTCTTTGATCTTTGTATCAATTATTTAATCCTTGCAATTACCCTTCA
CGATGGTTTCCTTACCCCTTTCCCCCTGCTACTGTTGGCATTTATTGCCA
CGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_n14.b1 MSMg01no166_n14.b1 CHROMAT_FILE:
MSMg01no166_n14.b1 PHD_FILE: MSMg01no166_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:28 2005
         (347 letters)



>mm_chr8_17843320_17844066
          Length = 747

 Score =  625 bits (323), Expect = 0.0
 Identities = 338/343 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tcataaattctaagatgccatgtaggagaagaacattcctaagtttggaaactgatctgg 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 547 tcataaattctaagatgccatgtaggagaagaacattcctatgtttggaaaatgatctgg 488

                                                                       
Query: 65  aggagatacgtgagcctattagtcactgtgcagaaggttataccatacacatttaaactg 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aggagatatgtgagcctattagtcactgtgcagaaggttataccatacacatttaaactg 428

                                                                       
Query: 125 tttaccacctgccgtgtactgcatattttcattcttcttgaacatggctttaaaagtgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tttaccacctgccgtgtactgcatattttcattcttcttgaacatggctttaaaagtgat 368

                                                                       
Query: 185 gtattgttttataataaaacatgcactcatctctaaaatctagtgctttagtcccagcaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 367 gtattgttttataataaaacatgcactcatctctaaaatctagtgctttagtcccaacaa 308

                                                                       
Query: 245 agatctttgccgttgtaatgcatgatgatccttcatgcttcttttcctccttgtgggatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agatctttgccgttgtaatgcatgatgatccttcatgcttcttttcctccttgtgggatc 248

                                                      
Query: 305 tcctgtttgtttccttgattgctatctcatattgtctttcaca 347
           ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 247 tcctgtttgtttccttgattgctatttcatattgtctttcaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_n14.g1 MSMg01no166_n14.g1 CHROMAT_FILE:
MSMg01no166_n14.g1 PHD_FILE: MSMg01no166_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:28 2005
         (458 letters)



>mm_chr8_17735598_17736455
          Length = 858

 Score =  801 bits (414), Expect = 0.0
 Identities = 447/458 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggactcagctttcattgagctgagataacattttgaaaactctagaataagttcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggactcagctttcattgagctgagataacattttgaaaactctagaataagttcact 260

                                                                       
Query: 61  ataaaataaagacttagaaatcaggatagaaatgaaatgttctgccactctctgagcata 120
            |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 261 ctaaaataaagacttagaaatcaagatagaaatgaaatgttctgccactccctgagcata 320

                                                                       
Query: 121 atagaacttaccctgcttgctttatccagttgagaagggtgctgtgaactacaggagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaacttaccctgcttgctttatccagttgagaagggtgctgtgaactacaggagagg 380

                                                                       
Query: 181 agtcacacccatttgtccatctgttaattggaaactgggcattttcaattgatgttgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcacacccatttgtccatctgttaattggaaactgggcattttcaattgatgttgcaa 440

                                                                       
Query: 241 atggaaaggggttttgaaggtctcataaatgaatggttttacatgtgtggattggtcaac 300
           ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 441 atggaaaggggttttgaaggtctcagaaatgaatggttttgcatgtgtggattggtcaac 500

                                                                       
Query: 301 atcagtatctagtttccaagatgtcccctcatattctggctacccaccacagtatctcta 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 atcagtatctagtttccaagatgtcccctcatattctggctactcaccacagtatctcta 560

                                                                       
Query: 361 agttgagtgtagtatgctggacacagtggcatgctactgctgacattgcactgtgaagtt 420
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 561 agttgagtgtagtatgctggacacagtggtatgctactgctgacattgcactgtgaagat 620

                                                 
Query: 421 aagagcttttgtcttgacatttctcttgcactgtgatc 458
           ||||||||||| |||| |||||| ||||||||||||||
Sbjct: 621 aagagcttttgacttggcatttcgcttgcactgtgatc 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |