BAC Information

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BAC

Clone NameMSMg01-167A21
Chromosome8 (Build37)
Map Location 23,326,757 - 23,327,429
singlet/doubletsinglet
Overlap geneVps36
Upstream geneDefcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2
Downstream geneRpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167A21.T7 (MSMg01no167_a21.b1)MSMg01-167A21.TJ (MSMg01no167_a21.g1)
ACCAG364686AG364687
length746777
length of high quality
(start - end)		679 (46 - 724)413 (75 - 487)
definitionCHROMAT_FILE: MSMg01no167_a21.b1 PHD_FILE: MSMg01no167_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:44 2005CHROMAT_FILE: MSMg01no167_a21.g1 PHD_FILE: MSMg01no167_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAATTATCACACAATAAAACACTGAGCTACAATCTACACAAGG
TTTCTCTGGTTTGGGGTGATATTAGCCTGAGGAGAAGGAACATGCAATTC
AGAACTGGCCGTGCACACCGCTGAAAGGTTCCTGAGTTTCCTCTTCGAGA
TCACACGAGTATGAATATGATCTATCCCAGGACTCACCCATCCCAATAGG
ATGAGGGCAAGAGGACGGCAGACACTGCCGTACCAGGTGAGCTCAGGCTA
CAGACGGCGTAACCTCAGGAGGCCATGGTTTTGCTTGCCACACGCACAGT
GGTAAGCTTAGGTAGGCTCTCAGGTCTGCTCTGTGGAGAACCATGGTTAC
AGTCGGCAAACTTCCCGTGCAGATTTCTTTACCTGATAGGCAATTTTAGC
GCTTCCAGCATCTTGCACGCATTTACCAAATCTTCTGGCGAGAGCAACTA
TTGAGGAAAAGAAATCTGTTTACACGGAGAGTCAACAGAGTGGTCCTATA
GAACTATAATAATCGCTAGAACAGATAAAAAGTCAATGACGTATGTGCAG
TCATCTCACCCCTGAGCATATGCCCGGGGGTCTGCATCCGTCCATGAGAC
ACTCGTATCCCATGGGTTACTGCTGCTTTATTCTCTATGGCAAAGACCTG
GACTCAACCTACTTGTCCATCAGCAGACCAGTGGGTAATGAAACGT

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTTTTTGAATTGTTGGTCAGGAGAG
TCCAAGAGACTCCCAAAACAATACAGGCTTCTGCTTCTGCCCTTGGTTGC
CTGATAGAGTGGGAAGCAAGGTCTCTCCTGCTAAAGACACCATGTACTTC
AGACACAGAACTTGGCGCATCAGAGCTGCATCTGACCTGAACATCTCCTC
CCTGAGGACTAGCTTCAAGGTACCAGAAAGTTCTATGCAGCTGCTAAAAG
AGGAGAGCAACCAATAGCCTATCTAGCTCTGGTTCCTACAACAATGACCA
GCATGCCAAGATACCCCTTAGAGAACACCACCAGCAAGGAACATGCTAAC
ATGAAAAGGGATCTCCCAGGGCCCACCCTAATAAAAGGAAAGAAGGAAGG
AAGGAAAGAAGGAAGGGAGGGAGGGAGGGAGGGAGCCTTTTTCTCTCCTT
CTTTTCTCTTTTTCTCTCTTCTCCTCCCTTTCCCTCTTNTCTCTTTTCCT
CTTTTTTTTTTTCTCTCTTCTTTCTCCCCCCCCTCTTTTCCCTCTTTTTC
TCCGTTTTTTCACCTGTTATTCTTTTTTTGTTTTTCCCCCTCCCCGTTGC
CCTCCTTGTCGTTTTTTCTTTCCTCCTCATATATCTCCGCCTTTCCACAT
CTCCCCTTCTCCCCTTCCCCTCTTCCTATATTTCTAACTCCATTAATGCT
TCAATTTATTTCCTTATCCTCATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_a21.b1 MSMg01no167_a21.b1 CHROMAT_FILE:
MSMg01no167_a21.b1 PHD_FILE: MSMg01no167_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:44 2005
         (679 letters)



>mm_chr8_23326673_23327751
          Length = 1079

 Score = 1232 bits (637), Expect = 0.0
 Identities = 665/675 (98%), Gaps = 2/675 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaattatcacacaataaaacactgagctacaatctacacaaggtttctctgg 64
           |||||  ||||||| || |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 757 gaatt--agaattagcagacaataaaacactgagctacaatctacataaggtttctctgg 700

                                                                       
Query: 65  tttggggtgatattagcctgaggagaaggaacatgcaattcagaactggccgtgcacacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tttggggtgatattagcctgaggagaaggaacatgcaattcagaactggccgtgcacacc 640

                                                                       
Query: 125 gctgaaaggttcctgagtttcctcttcgagatcacacgagtatgaatatgatctatccca 184
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 639 gctgaaaggttcctgagtttcctcttcaagatcacatgagtatgaatatgatctatccca 580

                                                                       
Query: 185 ggactcacccatcccaataggatgagggcaagaggacggcagacactgccgtaccaggtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggactcacccatcccaataggatgagggcaagaggacggcagacactgccgtaccaggtg 520

                                                                       
Query: 245 agctcaggctacagacggcgtaacctcaggaggccatggttttgcttgccacacgcacag 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 519 agctcaggctacagacggcgtaacctcaggaggccctggttttgcttgccacacgcacag 460

                                                                       
Query: 305 tggtaagcttaggtaggctctcaggtctgctctgtggagaaccatggttacagtcggcaa 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 459 tggtaagcttaggtaggctctcaggtctgctctgtggagaaccatggttacagttggcaa 400

                                                                       
Query: 365 acttcccgtgcagatttctttacctgataggcaattttagcgcttccagcatcttgcacg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acttcccgtgcagatttctttacctgataggcaattttagcgcttccagcatcttgcacg 340

                                                                       
Query: 425 catttaccaaatcttctggcgagagcaactattgaggaaaagaaatctgtttacacggag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 catttaccaaatcttctggcgagagcaactattgaggaaaagaaatctgtttacacggag 280

                                                                       
Query: 485 agtcaacagagtggtcctatagaactataataatcgctagaacagataaaaagtcaatga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agtcaacagagtggtcctatagaactataataatcgctagaacagataaaaagtcaatga 220

                                                                       
Query: 545 cgtatgtgcagtcatctcacccctgagcatatgcccgggggtctgcatccgtccatgaga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 cgtatgtgcagtcatctcacccctgagcatatgcccgggggtctgcatccgtccatgaga 160

                                                                       
Query: 605 cactcgtatcccatgggttactgctgctttattctctatggcaaagacctggactcaacc 664
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cactcgtatcccatgggctactgctgctttattctctatggcaaagacctggactcaacc 100

                          
Query: 665 tacttgtccatcagc 679
           |||||||||||||||
Sbjct: 99  tacttgtccatcagc 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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