BAC Information

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BAC

Clone NameMSMg01-167N13
Chromosome8 (Build37)
Map Location 11,890,161 - 11,890,728
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik
Downstream geneLOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167N13.T7 (MSMg01no167_n13.b1)MSMg01-167N13.TJ (MSMg01no167_n13.g1)
ACCAG365208AG365209
length719733
length of high quality
(start - end)
567 (35 - 601)239 (76 - 314)
definitionCHROMAT_FILE: MSMg01no167_n13.b1 PHD_FILE: MSMg01no167_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:43 2005CHROMAT_FILE: MSMg01no167_n13.g1 PHD_FILE: MSMg01no167_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGATTCACTATCCAAAGAGGATCCGCGGAATTCACTT
TGTACACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCC
AAGTGCTGGGATTAAAGGTGTGCCCCATCACACCCAGCTCCCAATTACTT
TCTAAGGACATAGGTGTGTTTCTTATTAAACTCTATACATTTAAAAGGGT
GAGGATAAGATTTATCACTATGTATCTACTATGTATCTACTATGTATCTA
TGTATCTATCATCTATATATCCATGTATCTACTATGTATCTATATAACTA
CGACATATCTATTATCTATGTATGTATCCATGTATATCTATGTATCTATT
ATCTATGTATCTGTTTCTATTTGTAATTTGCTTTAACTTAAAGATACATC
CTGCAATTGTTGTTGACTCAATATCATCTTATGGATACATTCCTTCTTCA
TAGCTGCAGGTCCTGGTCTGTGGCCACCCTACCATCTGTGTAGCTAGCTG
GCAAAGGATAGACTCTTGGGAACTATCCACCCACATTTGTAGAAATTGGC
AAAGGGGATGTTACTTCTGCACCACCATGTTTTGATTCATAGTTTCAGAG
AGTTTTCAGTCTACCCCAGCAGTGATGAGCATCCGTGTTGGCTCACAGGA
AGTAGTTGGCAGATAGAACCAGGGCCAGGCTAGTAACTCTCATAGGATTA
CCCTAGTACCTACTGAAGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGCCAATAGAGAGATCCTATCTC
AAACAACATGATGTAGGACACCTGAGAAAAAACAGCTGAGGCTGGCTTCT
GTTCTATACACACACACACACACACACACACACACACACACGGGAGGGGG
AGGAGAGGGAGATAGACAGACAGACATACACAAACACACACACAGAGACA
GACAGATAGTCAGACACAGAGAGACAGAGACAGAGACGGAAACAGAGAGA
CAGAAAGAAATGGAAACTCTTATAAAGAGAGAGATGGAGACACACACACA
TGAGAAAGTGGGATTATTCCTATTAGCTTGAATACTAAAAAAAAAAAAAT
CAATTGCTTAGATTCCGCATATAAAATGACCTCCATAAAGATGTTTAAAT
TTCAGGGGTGTTCAGGAAATTCTCTGAGAAAGCCACTGGAGATTGCTCTC
CAGCAAGAGGAAGGTGCAGAGCACAGGAGGAAACCGCAGGAGCTTCTGAT
GGCTTTGTCACCTACAGGACATGCCAGACAAGAATGCATTCTCTGGTTTT
TGGCCCCTAAGAAAAACTTCAATTCCTTAACTATGAAGCTGCGGCCCCTT
TCCACTCAGAATCACAGAGAAGCCCGCCTTCCTCCCGGGTGGGAGGAGTC
TGCCTTGCTCCCGGATGGGCAGGATGCTGCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_n13.b1 MSMg01no167_n13.b1 CHROMAT_FILE:
MSMg01no167_n13.b1 PHD_FILE: MSMg01no167_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:43 2005
         (567 letters)



>mm_chr8_11889962_11890928
          Length = 967

 Score =  915 bits (473), Expect = 0.0
 Identities = 540/579 (93%), Gaps = 28/579 (4%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcactttgtacaccaggctggcctcgaactcagaaatccgcctgcctctgcctcc 65
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaactcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcc 259

                                                                       
Query: 66  caagtgctgggattaaaggtgtgccccatcacacccagctcccaattactttctaaggac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caagtgctgggattaaaggtgtgccccatcacacccagctcccaattactttctaaggac 319

                                                                       
Query: 126 ataggtgtgtttcttattaaactctatacatttaaaagggtgaggataagatttatcact 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ataggtgtgtttcttattaaactctatacatttaaaagggtgaggataagatttatcact 379

                                                                       
Query: 186 atgtatctactatgtatctactatgtatctatgtatctatcatctatatatccatgtatc 245
           ||||||||||||||||||||           |||||||||||||||||||||||||||||
Sbjct: 380 atgtatctactatgtatcta-----------tgtatctatcatctatatatccatgtatc 428

                                                                       
Query: 246 tactatgtat--ctatataactacgacatatctattatctatgtatgtatccatgtatat 303
           |||||| |||  |||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 429 tactatatatatctatataagtacgacgtatctattatctatgtatgtatccatgtatat 488

                                                                       
Query: 304 ctatgtatctattatctatgtatct---------------gtttctatttgtaatttgct 348
           |||||||||||||||||||||||||               |||| |||||||||||||||
Sbjct: 489 ctatgtatctattatctatgtatctattatctatgtatctgtttttatttgtaatttgct 548

                                                                       
Query: 349 ttaacttaaagatacatcctgcaattgttgttgactcaatatcatcttatggatacattc 408
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttaacttaaagatacatcctggaattgttgttgactcaatatcatcttatggatacattc 608

                                                                       
Query: 409 cttcttcatagctgcaggtcctggtctgtggccaccctaccatctgtgtagctagctggc 468
           ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 609 cttcttcatagctgcaggtcctggtctgtggccactctaccatttgtgtagctagctggc 668

                                                                       
Query: 469 aaaggatagactcttgggaactatccacccacatttgtagaaattggcaaaggggatgtt 528
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aaaggatagactcttgaaaactatccacccacatttgtagaaattggcaaaggggatgtt 728

                                                  
Query: 529 acttctgcaccaccatgttttgattcatagtttcagaga 567
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 729 acttctgcaccaccatgttttgattcatagtttcagaga 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)