BAC Information

Click to search

BAC

Clone NameMSMg01-168H10
Chromosome8 (Build37)
Map Location 99,625,017 - 99,625,295
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC333331, LOC546090, LOC636859, EG384885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168H10.T7 (MSMg01no168_h10.b1)MSMg01-168H10.TJ (MSMg01no168_h10.g1)
ACCAG365640AG365641
length712731
length of high quality
(start - end)
---281 (81 - 361)
definitionCHROMAT_FILE: MSMg01no168_h10.b1 PHD_FILE: MSMg01no168_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:43 2005CHROMAT_FILE: MSMg01no168_h10.g1 PHD_FILE: MSMg01no168_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAAAATTGGGCGCCAAAGAGCCCCATTCGTATCGTCGNGGANNCCNGTT
TCCAAAAAAGGGGGNNGNGNGGGGNGGANNGGGNGAAGGGNNGGTTTAGG
CCGGAAAGAGGGGGGGGGNNGNNGGAGAGNNAGANAGAAAAGGAGAGAGG
AAGGAAGAGGGAAAAGAGGGGAGGGGAGGGGGGAAAAAGGGAGGGGGAGG
GAGGAAGAGGTTTTTGTAGAGANAGGGGGGGAAAGGGGAGGAAGGGAGGA
AGAAGAAAGAAAAAAGTTGGGGTGATTTTAGAAGGNGGGAGGGAAGAGGG
AAAGTTTTGGGTGGGTTTCCAAGACGAAGCCCCGGGGGGGGGGGGGNNGG
NNNNGNGGGGGGTGGNNAAAAAAANAAAANNAAAAGGGGGNNNNGGNNNN
GGGNNNNNNNNNNNNNNNNNNNNNNGGNGGGGGGGNNGGNGGGGGGGGGG
GGNGGGGGGGGGGGGGGGGNNGGGGGNGNNGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGAGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGTTTTTTTTTTTTTAGNGGGGGGGGGG
GGTGGGGGGGGGTGGGGAGGTTTGGGTGTGGTTTTTTTTTTGGGGTTTTT
TTGGGTTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGTGTAAATCCTTTGCA
TATGCACAGAGGGTAAAAATTTACAATTTGCTTTTCCAAAATGCAGTTTT
ATGCTCTTTTGCCGCATCTGATATCATTTATATGGAATGAGTTTTTATCT
ATGTGAATGTTTACAGTGTCTGTGTGTAGCCATAGAATTATCAACATGTT
CCTATGTGTGAATCCTACATAAAATTTAGAAATGATTTATATTAAAAATT
CTTTGAGTTCCTCTCTTGTTTTTCTTGTTCTTTGCTTCAGCATACCATAC
TATATTTTTGGTCGCTCTTCCAGGTCTNTACCCCATTTCATATATTATTT
ATCATGANATTTTAGACATTTGATAAAAAAACAAAATTATTTAGGAGGAT
GTTTTTACTCCACAAAAATCTTGGTTATTTCAGTTATAAATTCAAACCGG
AACAACTGAAAGACATTTCTATTCCATACAGTAGTTTCAGACATTTTGTG
GCGGTATCATAGTACCAAATGATCTGAAGGGTCTGTGATAGCTTGACTTA
CATGCTAGGTGCCTTGGCAAGGTTGGTATAGCCATACAATTCCCTTTAAG
TTAATTATTACTTGTGGCCTTGGAATATGTATCAAAGAACTTGTATGTAT
GTTGTGAAACTATTACCTTCCTGTAAAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_h10.g1 MSMg01no168_h10.g1 CHROMAT_FILE:
MSMg01no168_h10.g1 PHD_FILE: MSMg01no168_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:43 2005
         (281 letters)



>mm_chr8_99624817_99625497
          Length = 681

 Score =  493 bits (255), Expect = e-144
 Identities = 273/279 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagtgtaaatcctttgcatatgcacagagggtaaaaatttacaatttgcttttccaaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagtgtaaatcctttgcatacgcacagagggtaaaaatttacaatttgcttttccaaa 260

                                                                       
Query: 61  atgcagttttatgctcttttgccgcatctgatatcatttatatggaatgagtttttatct 120
           |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 261 atgcagttttatgctcttttgccgcacctgatatcatttacatggaatgagtttttatct 320

                                                                       
Query: 121 atgtgaatgtttacagtgtctgtgtgtagccatagaattatcaacatgttcctatgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 atgtgaatgtttacagtgtctgtgtgtagccatagaattatcaacgtgttcctatgtgtg 380

                                                                       
Query: 181 aatcctacataaaatttagaaatgatttatattaaaaattctttgagttcctctcttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 aatcctacataaaatttagaaatgatttatattaaaaattctttgagttcctctcttggc 440

                                                  
Query: 241 tttcttgttctttgcttcagcataccatactatattttt 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttgttctttgcttcagcataccatactatattttt 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)