Query= MSMg01no168_n04.b1 MSMg01no168_n04.b1 CHROMAT_FILE:
MSMg01no168_n04.b1 PHD_FILE: MSMg01no168_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:20 2005
(313 letters)
>mm_chr8_16535635_16536347
Length = 713
Score = 571 bits (295), Expect = e-167
Identities = 304/307 (99%)
Strand = Plus / Minus
Query: 5 gaattctaccttgttcttggcaccgttgtaggtggcaccattctaggtgttggcatagac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gaattctaccttgttcttggcaccgttgtaggtggcaccattctaggtgttggcatagac 642
Query: 65 tgaacagtaaaagaggagaaagctgagcagtggtagtcattctgcttcctgactgtggat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgaacagtaaaagaggagaaagctgagcagtggtagtcattctgcttcctgactgtggat 582
Query: 125 gtgattagctacctcaagctccaactgtcatatcctcccagcctgaatggatgatagctt 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gtgatcagctacctcaagctccaactgtcatatcctcccagcctgaatggatgatagctt 522
Query: 185 catcttgtgacaggaagagtatctgttactttcttctagctcagttgtctccactatgca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 catcttgtgacaggaagagtatctgttactttcttctagctcagttgtctccactatgca 462
Query: 245 ccatctaaagatacctgggagctatgcatagtgtaaagtcacaaatacattccttaggtt 304
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 461 ccatctaaagatacctgggagctatgcacagtgtaaagtcacaaatatattccttaggtt 402
Query: 305 aggcaga 311
|||||||
Sbjct: 401 aggcaga 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_n04.g1 MSMg01no168_n04.g1 CHROMAT_FILE:
MSMg01no168_n04.g1 PHD_FILE: MSMg01no168_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:20 2005
(282 letters)
>mm_chr8_16359175_16359855
Length = 681
Score = 439 bits (227), Expect = e-128
Identities = 270/285 (94%), Gaps = 7/285 (2%)
Strand = Plus / Plus
Query: 1 ttctctgcctaccatctgatctatccgacaggt-caactgttacaggaagtaatactacc 59
||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||||| |
Sbjct: 201 ttctctgcctatcatctgacctatcccacaggtataactgttacaggaagtaatactatc 260
Query: 60 caggtagatgttgagggaacatgagtaaatgcatgagtctctgggaaagaaatgga-agc 118
|||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct: 261 caggtagatgttgagggaacatgagtaaatgcatgagtctct--gaaagaaat-gacagc 317
Query: 119 catctgtgtggatccataaagtcaatagcaaataaaatatgagggaagaaataagcgtgc 178
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 318 catctgtgtggatccataaagtcaatagcaaataaaacatgagggaagaaataatcgtgc 377
Query: 179 tttctttccttctgatggaacagagacatctcacaggagatattggaattagtgtttctc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttctttccttctgatggaacagagacatctcacaggagatattggaattagtgtttctc 437
Query: 239 aagtctcatgataaatcaactcacaactgctcag-ggttacactt 282
||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 438 aagcctcatgataaatcaactcacaactgctcagtggt-acactt 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space: 183456
Effective search space used: 183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
