BAC Information

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BAC

Clone NameMSMg01-169B08
Chromosome8 (Build37)
Map Location 5,784,370 - 5,784,658
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
Downstream geneLOC100040360
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169B08.T7 (MSMg01no169_b08.b1)MSMg01-169B08.TJ (MSMg01no169_b08.g1)
ACCAG366065AG366066
length722735
length of high quality
(start - end)
312 (46 - 357)---
definitionCHROMAT_FILE: MSMg01no169_b08.b1 PHD_FILE: MSMg01no169_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:41 2005CHROMAT_FILE: MSMg01no169_b08.g1 PHD_FILE: MSMg01no169_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTAGCCGAATAAACCCTTCCTACATCAAATATCTTTTGGGAGCC
TTATTTCATAGTAAGGAAAAGTTAGCTAACATATTGAGACTAGTTATTCT
TATAATTGATAATAGTAAACTTTTGGTACTTTGAAAAATGCTATATATAA
GTAATACTTTGGACAAGTGCTTTGAATACATTGTAATTATTTGAGATATA
TGATCTTGTATTGAAGACCAGTTAACTGATAATAAAGCTAATTTTGGACT
CGTTTATAATTTATTCATCAAATGACTAAAATGATGGAAGCAGAGCTTAC
ATCCTTGTTTTTAATACCCCCCCCCCCTCGATGATATCATAGAAGTCTAC
TTACACATACATATAGATATATTTCTCTCCTTCAAATTTACTGATGTATA
TAAGTGCATCTGTTAATTTAATGATATTTACAAGAGATAATAACAGCCTT
TCTTCCTCCCATACTTAAAAATAATAAATACTTGTACTGGCTAGTTTTGT
GTCAACTTGACACAGCTGAAGTTACCACAGAGAAAGGAGCTTCAGTTGAG
GAAATGCCCCCATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATC
AAGGGGGAAAGGCTCCTTGTGGATGGGACCATCTCTGGGCTGGCAGTCTT
GCGTTCTATAAGAGAGCAGGCC
AATCAATGAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACAAAGACATGAGAATAGTA
TAAAGGAAGTCAAGAAGCACAAGTCTGGTAAATAAAGTATGAATACCCTG
CTCTTTGAAGGACAGATGTGTAGGTACAATCAGAAGGGAATTATGGTAAC
AGCTCTCCTGAAGAAAAATTTTTGAAGTGTCTAAATAGGTGAAAACTTGA
AATGCACATACCCCTGAACACAGGAAGGAAAAAAAAACTCACATGTGTTC
AAATACCCATGCAAATTAATTGTTTTCTTGGATACCCTAAAATGTACCAT
GGGAAAAGGAGAAATCTATTTTTTTATTTTACCCCCCCCCCACTGAGTCA
AATAATCTTATTGATTGAGTATAACCCATTTATCACAAAAAATAGTTTAC
CACTTATGCGCTTAATGGTGCTATTTTGTGGTGCTCATGCCCATTTAGAA
AGTGGGGCCTGCCCACCCTTACCTTTAGCCTTTACTTTCTACCCCTCAGG
AGACGACCTTTCTCACAATTGGTTCCTTCCCCCCTTGATGTCCTGCCCAA
GCCAAGCGAGCCCATGTATCCCGGCCCTAACTTCCCTCGAAATCTTGACC
CTCGAACCAACTTTTTCGTTTTTTCTCCTTTATCCCCGTACGTCTTCCCC
CCCCTTTGTCCCCAAACCAAGGGTCCTTTCCCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_b08.b1 MSMg01no169_b08.b1 CHROMAT_FILE:
MSMg01no169_b08.b1 PHD_FILE: MSMg01no169_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:41 2005
         (312 letters)



>mm_chr8_5784167_5784879
          Length = 713

 Score =  484 bits (250), Expect = e-141
 Identities = 280/290 (96%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactagccgaa-taaacccttcctacatcaaatatctttt-gggagccttattt 61
           |||||||||||||| || |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 204 ggaattcactagccaaaataaacccttcctacatcaaatatctttttggg-gccttattt 262

                                                                       
Query: 62  catagtaaggaaaagttagctaacatattgagactagttattcttataattgataatagt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catagtaaggaaaagttagctaacatattgagactagttattcttataattgataatagt 322

                                                                       
Query: 122 aaacttttggtactttgaaaaatgctatatataagtaatactttggacaagtgctttgaa 181
           |||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct: 323 aaacttttggtactttgaaaaatgctatgtataggtcatactttggacaagtgctttgaa 382

                                                                       
Query: 182 tacattgtaattatttgagatatatgatcttgtattgaagaccagttaactgataataaa 241
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 383 tacattgtaattatttgagatatatgatcttgtattgaagactagttaactgataataaa 442

                                                             
Query: 242 gctaattttggactcgtttataatttattcatcaaatgactaaaatgatg 291
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 443 gctaattttggactcatttataatttattcaacaaatgactaaaatgatg 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space:   213312
Effective search space used:   213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)