BAC Information

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BAC

Clone NameMSMg01-169I22
Chromosome8 (Build37)
Map Location 111,224,735 - 111,381,220
singlet/doubletdoublet
Overlap geneAtbf1
Upstream geneLOC100041744
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169I22.T7 (MSMg01no169_i22.b1)MSMg01-169I22.TJ (MSMg01no169_i22.g1)
ACCAG366393AG366394
length716717
length of high quality
(start - end)
301 (44 - 344)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no169_i22.b1 PHD_FILE: MSMg01no169_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:17 2005CHROMAT_FILE: MSMg01no169_i22.g1 PHD_FILE: MSMg01no169_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,224,735 - 111,225,031)(111,380,939 - 111,381,220)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTAAGTAAAATTAGCATAAGTATTTACAAGACTAAGCTGACATTTT
CCTATAATTGCAACATGAAATAGATTTATATCCAGAATTTTTTTTTCCTA
AATAGGGAGACTTCTTCACACCTTTTTTTTTTAAACATAAGAAAGAGGCT
ACAAGCTCACTTCTTGTGCTATTTACATTTTAAAAGAAAATAAGCACATG
ATATGTAACTGGTTTTTCAACATCTACAAGGAGAAATTTAATTCTGCTGC
ATCTCTAAAAACCAAACAGATTTATGGAGATTCGTGAAGACAGAAAAGTA
GGAAACAGAAGATTTTTCGGAAGGCCCCGAACGTTCCCCTTACCTGACGC
ATTATGGAAAAATTCAGAATTTACCAGACATCACAAAAGCCAGCTACATT
TTAGGCTGACCTGTATTTTGAACTGAAAGGGGGGGGAAAAAGATTAACTA
TTGCCAGTGGAAATTTTAAAATAATAATCAAAAACCGGACAAACTGCAGG
TAAAAATATACAATGGCTACAATAAAGATAAATATTTATTTAATCAAAGC
AGAGGTTGTATTTGGACTGTAGGAATGTTTCATCCTCCCCCCCCCCCAAA
AAAAAAAAGCCAGAAAGAAAAAAGCCGGGGTCATCAGAGGATCCTGAAGA
GTCCCTATTGACCAGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGTTCTGAAGCCCCAGATTTGGGGCCAC
AAACCACTACTAGTACTCAGGCCAGGCTCACTTCAAGTAGTATCTACTGG
GGCACTTTGCAGCAGTAATGGAACCCAGAGTGTATGCTGGAGAAACGTGG
GGCTTGGGGGTGGGAGACCTGCCGTGGGCCTGCTTCCAGAGTTGAACGCA
TGCCTAGCAAAAAGTGGTTCTTAAAAGGACACCAATCCAAACTCCTTCCA
TCCAGGAGGGGCCAGAGACAGACAGAAGGAACAGCCGCATTGATGAGCTG
AGCACACCTTCAGTGGATCCNTTCCGGAGGCTCCCTCCCGGCAAAGCCCC
CCAAGGCCCCCACCCTGTGTTCACTCAAGACAAAACTCACCTGGGTCAGT
GGAGGGGCACCTGCGGATGGTGAAGATCTGGCCCAGGTCCTCGTCCTCCT
CCGGGAGGCCCTTCTGCAGCCGCTGCAGCTTGCGCAGGCTCTCACTGCGC
TGGTGCTTCATGGAGCGCACGTGCTGGATGAGGTTGAGCTTGGCCTTGGT
GGAGTAGTTGCACAGGACACAGTGGTAGTAGCAGCTCTCACCCTCCACGC
CACTCTCATGCTGCTGCAGGTGCTGCAGGGACAGAGGACAGAGACATGGC
CTTGGTCAGGCTTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_i22.b1 MSMg01no169_i22.b1 CHROMAT_FILE:
MSMg01no169_i22.b1 PHD_FILE: MSMg01no169_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:17 2005
         (301 letters)



>mm_chr8_111224531_111225231
          Length = 701

 Score =  567 bits (293), Expect = e-166
 Identities = 296/297 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaagtaaaattagcataagtatttacaagactaagctgacattttcctataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaagtaaaattagcataagtatttacaagactaagctgacattttcctataa 264

                                                                       
Query: 65  ttgcaacatgaaatagatttatatccagaatttttttttcctaaatagggagacttcttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgcaacatgaaatagatttatatccagaatttttttttcctaaatagggagacttcttc 324

                                                                       
Query: 125 acaccttttttttttaaacataagaaagaggctacaagctcacttcttgtgctatttaca 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 acaccttttttttttaaacataagaaagaggctacaagttcacttcttgtgctatttaca 384

                                                                       
Query: 185 ttttaaaagaaaataagcacatgatatgtaactggtttttcaacatctacaaggagaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttaaaagaaaataagcacatgatatgtaactggtttttcaacatctacaaggagaaat 444

                                                                    
Query: 245 ttaattctgctgcatctctaaaaaccaaacagatttatggagattcgtgaagacaga 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaattctgctgcatctctaaaaaccaaacagatttatggagattcgtgaagacaga 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no169_i22.g1 MSMg01no169_i22.g1 CHROMAT_FILE:
MSMg01no169_i22.g1 PHD_FILE: MSMg01no169_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:17 2005
         (285 letters)



>mm_chr8_111380739_111381423
          Length = 685

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttctgaagccccagatttggggccacaaaccactactagtactcaggccaggctcactt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 482 gttctgaagccccagctttggggccacaaaccactactagtactcaggcaaggctcactt 423

                                                                       
Query: 61  caagtagtatctactggggcactttgcagcagtaatggaacccagagtgtatgctggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caagtagtatctactggggcactttgcagcagtaatggaacccagagtgtatgctggaga 363

                                                                       
Query: 121 aacgtggggcttgggggtgggagacctgccgtgggcctgcttccagagttgaacgcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aacgtggggcttgggggtgggagacctgccgtgggcctgcttccagagttgaacgcatgc 303

                                                                       
Query: 181 ctagcaaaaagtggttcttaaaaggacaccaatccaaactccttccatccaggaggggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctagcaaaaagtggttcttaaaaggacaccaatccaaactccttccatccaggaggggcc 243

                                                     
Query: 241 agagacagacagaaggaacagccgcattgatgagctgagcac 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agagacagacagaaggaacagccgcattgatgagctgagcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)