BAC Information

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BAC

Clone NameMSMg01-169J04
Chromosome8 (Build37)
Map Location 83,331,773 - 83,332,056
singlet/doubletsinglet
Overlap geneGab1
Upstream geneLOC100039439, Hhip, LOC546075, Gypa, Frem3, Smarca5, LOC666237
Downstream geneLOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169J04.T7 (MSMg01no169_j04.b1)MSMg01-169J04.TJ (MSMg01no169_j04.g1)
ACCAG366404AG366405
length718720
length of high quality
(start - end)
308 (35 - 342)284 (79 - 362)
definitionCHROMAT_FILE: MSMg01no169_j04.b1 PHD_FILE: MSMg01no169_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:18 2005CHROMAT_FILE: MSMg01no169_j04.g1 PHD_FILE: MSMg01no169_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCCTGGC
CTTTTAACTTTGCAATTCTTTCTATCTATTCCCTCACATCTGTTTCTGTA
ATCTGACTTTTGTCCCATCAAGAGTTGAATTGTGTCTCCTCAAGGATATG
TTGGTGTTCTAATCCCCTGTGCCTTAAAACATGACCTTATTTGGAGGAAA
AGTTATAATGTGGTCAAATTACAATGATGTCATTAGGTTGGGCTTTAATC
TAACTTGAGATGTCCTCATAAAAGGGGAAATTTGGGCACAGAGACAGACA
CACAGTGTTTTTATAAAGTGAAGAGGCACAGGGAAAAGCCGACCACTTAN
GTAGACTCCATGNCCAGGNTCCCAGCTAGGAGAAATTCTTCCCTCGAGTC
TTCTCNCAAAAAATGACCCAAATGCTACCTGGGTTCCTCAGACTTCTAAA
CAGTACATTTCCATTGTCCTAAGCCATCTACTTGCTGACCATTTGTGAGT
GCAACACCAGGAAATCAATATACACACTCTGCTGGCCTGTGCTTAAAGCT
CTGTTCTTGCCCATGCACAATCTACAAATCTGTGCTTTCTGGGTATATTA
TCTTTTTGTTACTGGCTCCAATTCCCACATATAACCTGTAATAATACCGT
TTTATGGGCATGCTTTTAAGTGCTTTCCTGTTGCCCTGTTCTTGCGAGTT
TGTCCTTATGGCGCCGTG
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATACATCTGGATGCAGCG
TAGTCAGGAAATGGCTTAGACAGAGACTTGGTTTTGAAGACTGGATACAG
GGGTTAAAAACAAACAAGCCAGCAAAGCTGGGGACACTTAAAATAGACAA
GCCCATCGCTCCCCTCCCCCATCCAACATCCATAATGCTCTCATTGTCTT
CAAAGGCTATGCCAGTTAAAGGGCATACACTCAGATGTCTAAATGTCTGA
AAACAACAAGTACGTGCCTAGGGATTTGTTTTCTCCATTAAAACTACTAC
ATTTCCAAAATACTGTTCNATGGGTACCTNGACATGGANCCATATAAATT
ATCCGTGAATAAGGATAAAAGCGAGCCGTGTGAATTAAAACAAGTGCTCG
ACTGTTTTCCAGGAATCAGTATTACCCTCTCTCCTCGAGCAAAATCAGGA
AAAAGCAGGCTTCGTGGGAATTTCCACGCTCCAGCTCTATCATTACAGCC
GTCTGTTCCACACACACAGAAGCCTAAAACTTCCTGTTTTCAAACCAGGC
GCACCATTTTCTAGCCTTGTCCCATTTGTGCTAACTTTACCTTAGAATAC
CAACCGACGAATACTCTGGAAAAAAAGGCAGACCCATGCCCTGGTTTCCA
GGCTCCTGGGCTCCCAACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_j04.g1 MSMg01no169_j04.g1 CHROMAT_FILE:
MSMg01no169_j04.g1 PHD_FILE: MSMg01no169_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:18 2005
         (284 letters)



>mm_chr8_83331573_83332256
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggatacatctggatgcagcgtagtcaggaaatggcttagacagagacttggttttgaa 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggatacatctggatgcagcatagtcaggaaatggcttagacagagacttggttttgaa 260

                                                                       
Query: 61  gactggatacaggggttaaaaacaaacaagccagcaaagctggggacacttaaaatagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactggatacaggggttaaaaacaaacaagccagcaaagctggggacacttaaaatagac 320

                                                                       
Query: 121 aagcccatcgctcccctcccccatccaacatccataatgctctcattgtcttcaaaggct 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcctatcgctcccctcccccatccaacatccataatgctctcattgtcttcaaaggct 380

                                                                       
Query: 181 atgccagttaaagggcatacactcagatgtctaaatgtctgaaaacaacaagtacgtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 atgccagttaaagggcatacactcagatgtctaaatgtctgaaaacatcaagtacgtgcc 440

                                                       
Query: 241 tagggatttgttttctccattaaaactactacatttccaaaata 284
           |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tagggatttgctttctccattaaaactactacatttccaaaata 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)