BAC Information

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BAC

Clone NameMSMg01-170N11
Chromosome8 (Build37)
Map Location 14,787,891 - 14,788,155
singlet/doubletsinglet
Overlap geneDlgap2
Upstream geneUpf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, LOC100041140, C030037F17Rik
Downstream geneCln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170N11.T7 (MSMg01no170_n11.b1)MSMg01-170N11.TJ (MSMg01no170_n11.g1)
ACCAG367280AG367281
length721816
length of high quality
(start - end)
268 (50 - 317)125 (75 - 199)
definitionCHROMAT_FILE: MSMg01no170_n11.b1 PHD_FILE: MSMg01no170_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:54 2005CHROMAT_FILE: MSMg01no170_n11.g1 PHD_FILE: MSMg01no170_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTGACCCAGGCCTTCCTGTCCCTACAAATAATAATGGCAT
CAGCCCACAAGTAAGCCTGCATCTTGTCCTGTCTCAAGATCCTGCTTGGT
CACATCTGTACCACTTCCTGTTGTGCATGGTTCCAGATTCCAGACTACAG
ACGTGGCAGTGTTGGGGCGGTGACATCTGTCTAACACAAAATGTCCCAGT
AAACACTGAGTGAGTGTGTGTGTGAAGGAAACTTCGATAAACTGGGACAA
GGGTGAGTGCTGCAGTCTCTCTGACACTAGACTGTGGGAACCCATGGTTC
TTTTGTTAAATACATCCCGGACTAAGCCTAAAGTCCTATGGGGTNAGAGN
CCANATTGCCAAACTTACAACAACAAAATGCTCACNNTATCGGAATTTCT
GCACAGGCCACCACGATCTCATGCCAAAGTCGGTCCGAAGGGTTCCTTCC
GGCGGATGTCCAAGGTGTCACTGCGAGTTCTGTGGTCTACCTCATTCTCT
TCTCGGAAGCAGCCAACACCGGGGGCTTCTGGGAATCCTGAGAAGCCTCC
AGATCTCTGTGCTGAATTGAACACCATATTGTGTCTTTGACATCCCTCCC
CTGTGCTGGATCGCTAGAGCAATATGCTTAGGCCCTGCCACCTGGCCTCT
TTCTTGTGTCTGAACATCTCC
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACTCTTTTAAAAGACTGCTGAATTA
TCTTATAGATAGTCTCACAATTTGACTGGTGTTTTGTAACCGAGAAGGAG
GGAGGGAGAGAGGGAGGCAGGGACGGAGGGAGGGAGGGAGGGAGGAGTCT
CCTTTTCTTCCTCCTTCTTTTCTTTTTTCTTTCACTGTTTCTTTTTTTTT
CCTTCCTCTCTTCCCCTTATTTTCTTATTTTTATTATTGTTTTTCTTTTT
TTAAGCACCCCTTTTTTTTTTTTATGCCCGGCCTCCCCGAGAAAGAAGAA
GAATTTTAGGGTAGCTTCCAGGGAACGGAGGTCCCCGGGAGGTTGGGTTT
GAGTTGTTGGTGGTTCGGTTTGTCCCCCCCAAAAAAAAAAAAAAAACTTC
TCCGTGGGGGGGGGGGGTTTTCCCTATCTTTCCTTTTTTCTCCTCTTTTT
CTTTCCTTGCACCTTCCCTTCTTTTTCTGTCTTCATTTATTTATTTTCTT
TCCCCTTTTTTTATTTATTTCTCTTCGGCCTTCCTTATCTTTCATTCTTT
CGTCTCCCTTGTTTCCCGTTTTCCTCCCTTTTTTTTCCCCATTTCTCCCT
TTTCCGCCCGCCCTTCTCACATTCTGTTTTCTTTTTCTCCTCTTTTTTTC
CCCTCCTTCCGCTCCCTTTTTTGTCTTTTTCCTGTTAGCCGTCTTCTCTA
CTTACCCCCCTTCGTATGCCCATCCCATTCCTTCCATCGTTCGTCTCCTT
GTTTTTTGTTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_n11.b1 MSMg01no170_n11.b1 CHROMAT_FILE:
MSMg01no170_n11.b1 PHD_FILE: MSMg01no170_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:54 2005
         (268 letters)



>mm_chr8_14787688_14788355
          Length = 668

 Score =  497 bits (257), Expect = e-145
 Identities = 263/265 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctgacccaggccttcctgtccctacaaataataatggcatcagcccacaagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctgacccaggccttcctgtccctacaaataataatggcatcagcccacaagt 263

                                                                       
Query: 64  aagcctgcatcttgtcctgtctcaagatcctgcttggtcacatctgtaccacttcctgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagcctgcatcttgtcctgtctcaagatcctgcttggtcacatctgtaccacttcctgtt 323

                                                                       
Query: 124 gtgcatggttccagattccagactacagacgtggcagtgttggggcggtgacatctgtct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgcatggttccagattccagactacagacgtggcagtgttggggcggtgacatctgtct 383

                                                                       
Query: 184 aacacaaaatgtcccagtaaacactgagtgagtgtgtgtgtgaaggaaacttcgataaac 243
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacacagaatgtcccagtaaacactgagtgagtgtgtgtgtgaaggaaacttcgataaac 443

                                    
Query: 244 tgggacaagggtgagtgctgcagtc 268
           |||||||||||||||||||| ||||
Sbjct: 444 tgggacaagggtgagtgctgaagtc 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)