BAC Information

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BAC

Clone NameMSMg01-172D10
Chromosome8 (Build37)
Map Location 77,399,583 - 77,399,913
singlet/doubletsinglet
Overlap geneIsx
Upstream genenone
Downstream geneHmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172D10.T7 (MSMg01no172_d10.b1)MSMg01-172D10.TJ (MSMg01no172_d10.g1)
ACCAG368201AG368202
length721712
length of high quality
(start - end)
195 (121 - 315)331 (382 - 712)
definitionCHROMAT_FILE: MSMg01no172_d10.b1 PHD_FILE: MSMg01no172_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:38 2005CHROMAT_FILE: MSMg01no172_d10.g1 PHD_FILE: MSMg01no172_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCA
CAGAGATTTCTGACTTTGTCTCCTGAGTGCTGGGATTAAAAGCATGTGCC
GCCATTGCCTATTTCTTTCGACTTCTATTAATTAATTACCTCTGTCTGTC
TGTCTGTCTGTCTGTCTGTCTATCTATCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCCTATCTATCGTATAAGACTGCTCT
ATTGCATGTACATTGTTCTTGCCAGCAGAGGGCATCAGACCCCTTTATGA
GTACCATGTGTCTCTTACCTGCTTAGTCAGCATGTCTCCCACCCTCCCTT
GTCTTCTTTCCACACCTAAACCCCATGTCAGGACTCTGAATATGGTCTGG
TGAGAAGACACAGGATTTCTTTGTTCCTCTATCCAATGGCTCCTTTGGAA
AATCTTTCTCTGCTGTTCTTTTCTCTGCTTTTCTATATTACTTTGTCTTG
CCAAGTTGGCCTACCAATGTTTTGTGGTTGACCCTATGTGGACTGCCACG
CTTCATATCTTGACTGTAACTCCTCTATTAACAACTTTGACGATTACTTT
CTCCTGCTCACATTTTTTTCAATGCATGTTTTTCTTAAATGCGCTTGACC
ACTTATTTTTTCCTTGCCACT
ATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTTTCCCAGGTCAGGCACTTTGG
CAGTTTATGTCTTTAAGGGATCTCAGGTACAAAGCTACTATGTCAATAGT
TGTGTGGTTATTACTATCCTAGCCCTCCTGTGGTGTCAAAAGGTGCCAGT
TAACCAGTAGTGGTCAGGATAGAAGGATTTCTTTTTTCAAGTGTGCGTGT
CTGAGCAAAGCTGAGGCGAATACCAGTGCAGACAGGATGCCAATATGGCA
GCCAGTACAAAGGTAAGCTGTGTAAGTTTGTGGGACGTGCTGGGTACGTA
GGGGAGGTATTTTTTAAAACCCACCTCTCACCCCAGACATGGCACCAATG
CACAGGGAAACTAAAGCAAATCACCCATCTGGGCCTCAGTTTCCTCAAAG
GAAACATGAAAGAGCAGAGATAGGTCTCCATAAAGTTCCTTGACTGACTC
AACAATAAATTAGCTGTTAGGAACCCTAGAGGAATCCATGGTGGTCATTT
TTCATATTAGAGACTGCCTCTCTAGAGAATGTTTAGCCACAATACCATGC
GGGAAGGGAATAAGGGAGCAAGGAGGTCAACCATGTCAATCGTCCTTGCC
CCTCCCTGCCATCTGAAGAGCCCCAAATGCAACTCAGGATATATTGCTGC
TGGCTACTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_d10.g1 MSMg01no172_d10.g1 CHROMAT_FILE:
MSMg01no172_d10.g1 PHD_FILE: MSMg01no172_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:38 2005
         (331 letters)



>mm_chr8_77399383_77400113
          Length = 731

 Score =  594 bits (307), Expect = e-174
 Identities = 325/331 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccagacatggcaccaatgcacagggaaactaaagcaaatcacccatctgggcctcagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccagacatggcaccaatgcacagggaaactaaagcaaatcacccatctgggcctcagtt 260

                                                                       
Query: 61  tcctcaaaggaaacatgaaagagcagagataggtctccataaagttccttgactgactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctcaaaggaaacatgaaagagcagagataggtctccataaagttccttgactgactca 320

                                                                       
Query: 121 acaataaattagctgttaggaaccctagaggaatccatggtggtcatttttcatattaga 180
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 321 acaataaattagctgttaggaaccctagaggaatccatgatggtcatttttcatatcaga 380

                                                                       
Query: 181 gactgcctctctagagaatgtttagccacaataccatgcgggaagggaataagggagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactgcctctctagagaatgtttagccacaataccatgcgggaagggaataagggagcaa 440

                                                                       
Query: 241 ggaggtcaaccatgtcaatcgtccttgcccctccctgccatctgaagagccccaaatgca 300
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 441 ggaggtcaaccatgtcaatcgtccttgcccctccttgacatctgaagagccccaaatgca 500

                                          
Query: 301 actcaggatatattgctgctggctactgccc 331
           ||||||||| | |||||||||||||||||||
Sbjct: 501 actcaggatgtgttgctgctggctactgccc 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)