BAC Information

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BAC

Clone NameMSMg01-172F13
Chromosome8 (Build37)
Map Location 53,178,545 - 53,178,831
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517, LOC623872
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172F13.T7 (MSMg01no172_f13.b1)MSMg01-172F13.TJ (MSMg01no172_f13.g1)
ACCAG368286AG368287
length736729
length of high quality
(start - end)
317 (41 - 357)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no172_f13.b1 PHD_FILE: MSMg01no172_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:48 2005CHROMAT_FILE: MSMg01no172_f13.g1 PHD_FILE: MSMg01no172_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGCCCATACCTAAATGTAGGAAAAGCAATATACAGCAAACCAGTAGCC
AACATCAAACTAAATGGAGAGAAACCTGAAGCAATCCCACTAAACTCAGG
GACTAGAGAAGGCTGCTCACTTTCTCCCTGCATATTCATTATAGTACTTG
AAGTACTAGCCAGAACAATTGGACAACAAATGGAGGTCAAAGTGATACAA
ATTGGAAAGGAAGAAGTCAAAATATCACTATTTCCAGATAATATGAAAGT
ATACCAAAGTGACCCTATTTTTTCTACCAGAGAAGTCCGAAACCACGTAA
ACAATTTCAATAATCCGNTGCANATACCCTTATTTCATACAAATTAGTAG
TCTTACTCTACTCCCAGGATAAACAGAATGAGAAAGAGTGCGGGGAAATT
GACACCCTTTATAATAGTCACAAATAATGTAAAAGACCTTGGTGTGACTC
TAACCAAGCAGGTGAAAAATATATATGACAAGAACTTCAAGTCTCTGAAG
AAAGAAATTGAAGATCTCTGAAGATAAAAAGGTTTCCCATGCTCATGGAC
TTGCAGGATTAATATAGTAAAAATGGCCATCTTGCCGAAAGTAATGTACA
GATTCAATGTTATCTCCTTTAACATCCCCACCCTATTTCCTCCTAGAGTT
ATTAAGAGCAATTTGTATCCTTATTTGGAATAACCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAATTTCATATCACTTAATATAAATTTTGA
CTTGATATTAAGGCTGAGACTGAGGTTTAATAACAGGGCATGGAGGACCA
GAATGTGTTTATCCCTGCTAATTTTTAGCAGACTAGTGAAAAGCATTTAT
AAACATACATATTTCAATTATTAGGATATTTGATAATTGGTACTATATTC
ACTTTTGTTCTATTTCATTTTGAGATCAATTAGAAAGACTTTGCACAATA
TTCAGTACCTGTTATGATTATATTTTCTCTTATTTAACTAAATACTGTAT
ATGTTCTTTTTTTGCCNAGCAAACCACATATTTTATTTTCTTTATATTTT
GATATGTTAACGCCAGAGAAAATATCTGCCAACCACCAGTCAGAATAAGA
CCCCACTTGTAATTGAAGTGCAGTTATGTTTATTCATAAATTGATATGTT
TATATTTTGCACTGAGTATGGTGGCTCATGCCTTTAATCACAGTACTCAA
TTGGAAAGGGTAAAAGGATACTGAGGAATATGTAGTAAATTTCAGGAGAG
CCATGCGTGCACTGAGAAACCCCATCTCAAAATTTTTTTACCTTAGTTTG
ACAAAATTCTTAGAACCCAGCTTGTTGAACTTTGCGTCAACACTCACATG
TGCCGCGCACATAAATGCGCATATTGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_f13.g1 MSMg01no172_f13.g1 CHROMAT_FILE:
MSMg01no172_f13.g1 PHD_FILE: MSMg01no172_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:48 2005
         (288 letters)



>mm_chr8_53178345_53179032
          Length = 688

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatttcatatcacttaatataaattttgacttgatattaaggctgagactgaggttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 caaatttcatatcacttaatataaattttgacttgatattaaggctgagactgaggttta 428

                                                                       
Query: 61  ataacagggcatggaggaccagaatgtgtttatccctgctaatttttagcagactagtga 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 427 ataacagggcatggaggaccagaatgtgtttatccctgcaaatttttagcagactagtga 368

                                                                       
Query: 121 aaagcatttataaacatacatatttcaattattaggatatttgataattggtactatatt 180
           |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 367 aaagcatttataaacatacacatttcaatttttaggatatttgataattggtactatatt 308

                                                                       
Query: 181 cacttttgttctatttcattttgagatcaattagaaagactttgcacaatattcagtacc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 307 cacttttgttctatttcattttgagatcaattataaagactttgcacaatattcagtacc 248

                                                          
Query: 241 tgttatgattatattttctcttatttaactaaatactgtatatgttc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgttatgattatattttctcttatttaactaaatactgtatatgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)