BAC Information

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BAC

Clone NameMSMg01-172H04
Chromosome8 (Build37)
Map Location 43,766,868 - 43,767,151
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172H04.T7 (MSMg01no172_h04.b1)MSMg01-172H04.TJ (MSMg01no172_h04.g1)
ACCAG368358AG368359
length727753
length of high quality
(start - end)
317 (41 - 357)284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no172_h04.b1 PHD_FILE: MSMg01no172_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:55 2005CHROMAT_FILE: MSMg01no172_h04.g1 PHD_FILE: MSMg01no172_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTAATCTTTCCTCCTGGAGGAAAATGGCTTTTAGTTTTAAGCTTTGCATA
TTTTAGAAAGTTAATCCTCGCACAAATGCCATGTATGTAAGTTATACCTC
GGGGTCTGAGGTAGCACCCCATAATCAAATACATTAATATTTATGCAGTG
AATAGTAAGATCATTCACTGGAATGGAAGAAATGAAGACGAAGTCTAGCT
TAATGTCAACTCAGAATAAATTTCATTGGCATAAATTACCCAAAATTTAT
TGTAACATTTATGACCTAATATCCTTTAGATATTGGAATTGTATACATAT
AATAGTACAATAATCACCACACGGAGTATGAAGTTACTCCACTTCCCAGT
TACAAATCAACAGAAAAGTAATGTGATGTATAAGGAAAAAGACTAATACT
AAAAAACTCGTTGGAAGGACTCCATGCCAAAAAAACGATCACTCTCATGT
CAAGTGATAATACAGATGGTTTAAAAGCATCATTTGGGGTAAAGACATAA
GATAGATTTAAACTTCTTCAGTGCTCAGTTACCTAATACAAGATTGCTTT
ATAATACTGTTTTATTATGTATCCAGACTACATTATGCCCTTAGTCCATG
ATCATTTTCGGTATCTGTCTTTTACCTTGGATATTCTTTATTGGTGGACA
ACTCCCCTCTTATTTTCCACTTCCCCG
AATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGTGATTGTTTCTCTGCAAGAAGCTAA
TCCTCAAAACGTATGACCCCATCTAATGATGGAATTTTGGGAACATTCTT
TATCAAGAGGTTTGGTGACAAGAGCACAAAGCAAAGCAAATGTTGAGACT
CTGAAAGTATTAGTGTAGGATCCCTGGGAAGGTTTCTGAGGACCCTTCTT
CATTTTAGTTTGAAAGGTTCAAGCTGAGCCAAGAGCTGGTGTAGGCAGGC
CGGTACTTGAACACCAGCATGGTGTATGAGTGTTGTTGTTGTTGTTGTTG
TTACTTTTTATTTATCCCCCCCCCCCCCACTCACTATTCTCCTACTTCTA
CCTTCTGATAGAACGCCATAAGATAACTATAAGACACTCTAGGGTTAACA
ATACATTATTATCCCATAGATTCTTAAGGCTAAGCTCTTGTACCCTGGTT
ACACTGTCTAAACTACAGCATATAACACCTCATGATGATCATGCTGCACG
CCATGTGATCCTAATACACCTCTTCTTGTTCATGCAATTCTGTTTTGCTC
ATTGCCTCGTACGTACCCCTTCTGCCGTTCTCCCTTTGATTTTCTTCTGA
AGCCATCCCTATTTACTCTAGTTTCTAATCACATATTCGATTTTGCTCCG
ATCTCTCCTTTCTGAACTTTCTTCACGTTCTCTTTTCCAATGCCTTTTCC
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_h04.g1 MSMg01no172_h04.g1 CHROMAT_FILE:
MSMg01no172_h04.g1 PHD_FILE: MSMg01no172_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:55 2005
         (284 letters)



>mm_chr8_43766694_43767377
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgattgtttctctgcaagaagctaatcctcaaaacgtatgaccccatctaatgatgg 60
           |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||
Sbjct: 458 tggtgattgtttctctgcaagaagctaatcctcaaaacgtatgagctaatctaatgatgg 399

                                                                       
Query: 61  aattttgggaacattctttatcaagaggtttggtgacaagagcacaaagcaaagcaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aattttgggaacattctttatcaagaggtttggtgacaagagcacaaagcaaagcaaatg 339

                                                                       
Query: 121 ttgagactctgaaagtattagtgtaggatccctgggaaggtttctgaggacccttcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttgagactctgaaagtattagtgtaggatccctgggaaggtttctgaggacccttcttca 279

                                                                       
Query: 181 ttttagtttgaaaggttcaagctgagccaagagctggtgtaggcaggccggtacttgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttttagtttgaaaggttcaagctgagccaagagctggtgtaggcaggccggtacttgaac 219

                                                       
Query: 241 accagcatggtgtatgagtgttgttgttgttgttgttgttactt 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 accagcatggtgtatgagtgttgttgttgttgttgttgttactt 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)