BAC Information

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BAC

Clone NameMSMg01-172K06
Chromosome8 (Build37)
Map Location 104,794,335 - 104,794,652
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11, EG667618, LOC100041368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172K06.T7 (MSMg01no172_k06.b1)MSMg01-172K06.TJ (MSMg01no172_k06.g1)
ACCAG368488AG368489
length718720
length of high quality
(start - end)
319 (45 - 363)231 (133 - 363)
definitionCHROMAT_FILE: MSMg01no172_k06.b1 PHD_FILE: MSMg01no172_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:09 2005CHROMAT_FILE: MSMg01no172_k06.g1 PHD_FILE: MSMg01no172_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAACATGAGGATTTTTTTTTCCTTCTATACAAGCAACATGTCACG
ACTTGAGTTCTCTCACAAATCCAATTCAGAAACAATCTTAGTTTATTTTG
ATTCTTCTTTTCATTGAACATGTCTATATATCTTCAGCATCAATGTCCAA
ATATCTTCTCCTGTAGCTTCCTTTTTCTTTGACACAAAAGAACTAGCAGC
CAGCAAAATTTCCTTCCCTGTATAAAAACAAAAGATAATAGAGTTTTTTT
TTAAGTTGTTGAAGTGGGGCGATATATGTAAAGACATCATGCATTACTTC
CATGGTTTTGTTGTTATTACCCCCCGCTCCCCCCGCTTTTTCCATCAGTC
CTATACAATAACATGAATTCACGTTAAAAAAGAGAAGTAGAGAAGCCTTA
TTGAAACTAATTACAGGATTTGTTGGTTTCTGACTTACCTTATCTAGTGC
ATGCATGTGCTTACACACTTACACACATACATACACACTCTTCATTATGC
TCCCCAGCTTTGTGAGATTTGTTACCCTATCCACCTACATAATGAAGTTA
GCCTCCCACTCTGCCTTCTTAGTCTACAGATTAATGATGTGTCTCGCAAA
CTTATCCTTAATCATTATTGATGACCGCTGCATTGTTTTGTCTTTTGCTC
CTCACCCCTTGAATATTG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTTTAAGAGACAGTAGTTTGCAA
AAGCACATCACAGTGGCTGTTAAATCCAAAAGATGAAAGTCAGAAGATAG
TAAAGGCATAGAAAATGACTCATGTTGTCAGCACTGTCTGATGCCGCTTC
TGTTAAAATGTGAACATCACATAGTGATTAAAAAATTTCTAAACTCATCT
AAAAATACTTAGTAGATGACCTAGCATTACCACTCCTGGGTATTTATCCA
AAGGGCTCCAACTCAACACGTCACAAAACATCAAAGTTTACTGTCATACA
ATTCACAACAGTTGTTTTTTTGTACCCACCCGCCCAATGTATCAACAGAT
GTACGGATAAAGAACATATACCCGACGCTGAATTGAACTTTTTAATGAGT
AAAAAGACCATTGTTATATTATTTGCAGAAAAATGGATGGAACTGGAAGT
AATCATAATTATTGAATTAGATCAATTTCGGAAAGACGAATATATTTCTG
TAAATTGTCATTCCTATACTTTATGCATGTACATTAAACAGTGTGACCAT
ATAATACATGACAGTGCAAGCAAAACCCAGGAATATAGAGAGCTATTTTA
AAAATTGCCCTCTATATACAGTTCCAGGAAGTCTCCATCATGTTATTGTT
TACAACTTATTTCTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_k06.b1 MSMg01no172_k06.b1 CHROMAT_FILE:
MSMg01no172_k06.b1 PHD_FILE: MSMg01no172_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:09 2005
         (319 letters)



>mm_chr8_104794131_104794852
          Length = 722

 Score =  555 bits (287), Expect = e-162
 Identities = 310/319 (97%), Gaps = 5/319 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaacatgagga-tttttttttccttctatacaagcaacatgtcacgacttgag 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaacatgaggattttttttttccttctatacaagcaacatgtcacgacttgag 264

                                                                       
Query: 64  ttctctcacaaatccaattcagaaacaatcttagtttattttgattcttcttttcattga 123
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 265 ttctctcacaaatccaattcagaaacaat-ttaatttattttgattcttcttttcattga 323

                                                                       
Query: 124 acatgtctatatatcttcagcatcaatgtccaaatatcttctcctgtagcttcctttttc 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 acatgtctatatatcttcagcatcaatgtccaaatatcttctcttgtagcttcctttttc 383

                                                                       
Query: 184 tttgacacaaaagaactagcagccagcaaaatttccttccctgtataaaaacaaaagata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgacacaaaagaactagcagccagcaaaatttccttccctgtataaaaacaaaagata 443

                                                                       
Query: 244 atagagttttttttt---aagttgttgaagtggggcgatatatgtaaagacatcatgcat 300
           |||||||||||||||   ||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 444 atagagttttttttttttaagttgttgaagtggggtgatataggtaaagacatcatgcat 503

                              
Query: 301 tacttccatggttttgttg 319
           |||||||||||||||||||
Sbjct: 504 tacttccatggttttgttg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 722
Length adjustment: 9
Effective length of query: 310
Effective length of database: 713
Effective search space:   221030
Effective search space used:   221030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)